Query= MSMg01no373_h22.b1 MSMg01no373_h22.b1 CHROMAT_FILE:
MSMg01no373_h22.b1 PHD_FILE: MSMg01no373_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:28 2005
(486 letters)
>mm_chr18_71822517_71823401
Length = 885
Score = 737 bits (381), Expect = 0.0
Identities = 447/483 (92%), Gaps = 26/483 (5%)
Strand = Plus / Minus
Query: 6 ggaattctctgtaggttgccttttacatttccagcatcttcagaaactctgacagtggca 65
|||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 773 ggaattctctgttggctgccttttacatttccagcatcttcagaagctcagacagtggca 714
Query: 66 ggatttcagtgattcatgagaatcccctagaaacactaggcattcaccccctaggtgact 125
||||||||||||||||||| |||||||| |||||||||||
Sbjct: 713 ggatttcagtgattcatgaaaatcccct---------------------cctaggtgact 675
Query: 126 gataaacgcaggttcaacttat-ataatagcagagataattcagtagaggtaaatattta 184
||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 674 gataaactcaggttcaacttatga-aatagcagagataattcagtagaggtaaatattta 616
Query: 185 aagggtggtaaaagctataatagaaaatttggcaatggaaaaaaaattaagaggctggag 244
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 615 aagggtggtataagctataatagaaaatttggcaatgg--aaaaaattaagaggctggag 558
Query: 245 aaataacgcgtttctgtgtctatctcatagggtggaaaag-aaaaaacgagtatagacta 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 557 aaataacgcgtttctgtgtctatctcatagggtggaaaagaaaaaaacgagtatagacta 498
Query: 304 ttttgccatatccacaataggaatgggtatggactggactgagtgacaactctgcttctg 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 497 ttttgccatatccacaataggaatgggtacggactggactgagtgacaactctgcttctg 438
Query: 364 tagagaaagagggactcaaaaggactgcataatggaagccatgcttagaagttagcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagagaaagagggactcaaaaggactgcataatggaagccatgcttagaagttagcattt 378
Query: 424 gaattgaaaagaagcttttcacgctgcccgggaatgctgtatcttattggctttgctggt 483
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 377 gaattgaaaagaagcttttcacgcagcccgggaaggctgtatcttattggctttgctggt 318
Query: 484 ggt 486
|||
Sbjct: 317 ggt 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_h22.g1 MSMg01no373_h22.g1 CHROMAT_FILE:
MSMg01no373_h22.g1 PHD_FILE: MSMg01no373_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:28 2005
(475 letters)
>mm_chr18_71690722_71691596
Length = 875
Score = 801 bits (414), Expect = 0.0
Identities = 457/474 (96%), Gaps = 8/474 (1%)
Strand = Plus / Plus
Query: 4 gggg-gtcctaaggcctgacactattactgaggctatggagcactcacaaaaaggcatct 62
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggggagtcctaaggcctgacacaattactgaggctatggagcactcacaaaaaggcatct 267
Query: 63 atcatgactgccctccgaaagacccaacaagcagctggacgagtcagacacagatatttg 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 268 atcatgactgccctccgaaagacccaacaagcagctggatgagtcagacacagatatttg 327
Query: 123 cccccaacaaatggacagaagcagctgacccctgttgaattgttgaattagggaaggctg 182
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 328 cccccaaccaatggacagaagcagctggcccctg-----ttgttgaattagggaaggctg 382
Query: 183 aaagaagctgaggagaagggtgattctgtaggagtaccagctgtctcaaataatctggac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagaagctgaggagaagggtgattctgtaggagtaccagctgtctcaaataatctggac 442
Query: 243 tcccgagatctctcaaacaggggggga-agggcgggggtatggaatatggagtataaaaa 301
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 443 tcccgagatctctcaaacagggggggaccgggaggggg-atggaatatggagtataaaaa 501
Query: 302 gaaattaaaaataaaattaaattaaaaaaagaaaaacaatctcaaaccaacattcattct 361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaattaaaaataaaattaaactaaaaaaagaaaaacaatctcaaaccaacattcattct 561
Query: 362 gttctgtctctcagctctcagaattatgtctatttgtatctccttcccatggcagttttt 421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gttctgtctctcagctctcagcattatgtctatttgtatctccttcccatggcagttttt 621
Query: 422 aattgccaataattacctatatctatcatctgcacatggaagggttaacctatt 475
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aattgccaatacttacctatatctatcatctgcacatggaagggttaacctatt 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
