BAC Information

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BAC

Clone NameMSMg01-374O05
Chromosome18 (Build37)
Map Location 3,841,679 - 3,841,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374O05.T7 (MSMg01no374_o05.b1)MSMg01-374O05.TJ (MSMg01no374_o05.g1)
ACCAG480574AG480575
length7512,136
length of high quality
(start - end)
245 (81 - 325)---
definitionCHROMAT_FILE: MSMg01no374_o05.b1 PHD_FILE: MSMg01no374_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:16 2005CHROMAT_FILE: MSMg01no374_o05.g1 PHD_FILE: MSMg01no374_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCGAGAGGATCC
GCGGAATTCTGGTGCTTACTCTCTGTTTGTCCAGAAATCATCTTGCCTGA
CAATAGCAACACTATCAGAACAATTCTATCAGGAGTTTAAGACCAACTTC
TGCCATAGTGGGAGTTAGAGACCCACCTAGGTCACGCTGACCTTCCTCAA
ACAAACCAAATCAAGCAACTGCCTTCAAAAACCCTCAAGTAAGAAAACAG
GTAATGATATATAACTTAAAGTTCACTCAAACTGCATGTGTATGTGTGTG
TAACTGTTACCACACAGTGTGCACTTTTTCTTTAGCACACGGAGCTCTCT
GTACTATGTTCATATAATAAGAACCCCCTGTCTCTAACCTTGACACTTAC
TGGCTGTCCATGTTTGTAACCCGCATTATCTAACTAGTTCATGGTTGAGA
AAATACAGCCTGTTCTCTTTGGTCACCTCATCTTCTCACTCGGCATAGTT
TCCTTCAAATGTATTCGATTTATCTTATCTATTGACAGTCTGTTCCTTAC
TATTGCTGAGCAGCATTCTGTGGAATTAAGGCCTCAAAGCTCATTCTACA
TATCGCCTGTACCTATGACCTTATCTACTTTCGACACTTATAAGTGAAAT
TTACCCCTCTCCCTGCTTGTAAATAATTTCTTTATCTCTCTAGAAATTAT
GACCTCTCACCCTTCCTTACGAGTTCTGCATTCTTACCTCATCTGTTTAT
T
GGGGTGTGGGTAGGNNNGNCGTGGGAGTNCTAANACTNNTANANTNNCTT
NNCCATNTNATTNNCTTCTCAGTANCACGCCTCTNCTCTATTATGCTGNC
AGTCNNTACTCAGNGNCCACACACNGACCCATCAGAGAGCAGACGCTATA
AGGAGAGNGNCGATGCGCGTTGACCGAGGGNCGCAGACGCAGTAATACTT
CGACGAGCACTGCTACGTCTGTCTCGTACGTGCTGTTGTAGTACGTGACG
TGTTGGGTCGTCGCTGTCCGNGTCCNATNTAATCTGCNTGTGAGGCTTCG
TGCTCGGGCGAGCAGCGACNNCCGNACNCNGCCCGATGTGCGAGCTTNCG
ANCATCACTTTCGTGTACGCTGCGACCGATCATGTAGAGAGTACGAATCT
AGGGACTACGAGACGATGAATGAGTACTNACTGTANTCATATACCGAGTC
CTTCCTCGCTACTCCTTCGTCTACGTCTGCAGATCCGTATNTGATGTCAT
TTCGTNTGGNTGCTCTTCGTGTGTGCTCACTCTCTACGCGACCCGACAGC
GCGCGTTCTATGCTTTGGTATGTCGCGAGACGCGCTNGCTGGCACTGAGG
CCAGTGCGAGAGATGTACGTAGATCAAGCGCTAGTACGAGACAGGCATAC
TAGGACGGCAACTGACACGAACAGCGCACGGCGACTGANACGGACGACTC
GCGTCGCTATNATTCGATGTACTCATCTCGCTCACGACANCTGCACACCN
ACACANCCATATGAGACACACGACGACATACACTAGCGTACGATCTATGA
CGACGTGTGTCGACGGCGNACGTCGTGCAGCAGTCGCCTGCGCGATGACA
TANNCATGGGATGATATCGTGCCAGTATGCGAGACATGTGCGCAAAGNAG
CGTATACTCGTGCGACGAGCGATGCGACACACGCTGTGTATGTCTGATCT
TANCGGCGGCTAGCTAGTGCTACGCGGCGTGCTACACTCGACGGACGAGC
TGCGTAGGCGAGGTNAGACGTATACGTCGAGCACGACNGATACGATGAGG
CCGTGGTGAGTGTGCAAAGAGGGCATGATAACANCATAGATGTAGAAGCG
TGATTNCGCGCGTACAGGGACGAGCGGTGAGCGCGTGCGATCATGAGGCT
GAGAGCGCAGCGTGATCGTTCGCATGTGTCACAGCAGACATATCTAGCTA
GCAAGATGACTTAACACAGGAGTGTGTCATACACATNTGTGCTAGTATAT
GTGCTGATTTGAACGTCGCGGNAGCCGAGGATGTAGCATACGTCNGCTGT
GTAGCGTCTGCGAGTGTCGCGCGTGTATCACGACGCGCGATAGCCGCGGC
GATGCGTCGAGTACTATTACAGACATCCCTCTGGGAGTGACGATGCGCGC
GTGCGTGGGNTNTTAGCGCGCGGTGCNGACGGCGCTCACATGTACAGGAC
GTTGTAGCTGCGATATGACTGTGCCGCGANTGTCGTCACGTCATGATCGA
CACGCTGCATGACTAGCTGGTGNGNGTCGCGCTGTAGTCGGCTGTGGTTC
TGTCGCTCNACTCTATAGATCACGTGTATATCGCAAGCGCGAGCTACGCT
CCGACGCCATATGCTGCGCGATCGCTGTTAGATNGATGTAGCGNGTCGCC
TGATCGCTCGACTCACTACGCACGCGATGAGTATCGTCACTCATGCTATG
ATGAGATGCTGCCGCACCACAGCACTCATTGACCGTGCACGTATCGACAC
TNGCGCTACGAGACGACGCGCTAGCATGANCNCGCNGACGCTANTAATGT
GCGTGCTCCACGTCTTATCCTGCATTGCTAGCGCTAGAGCGCATCTCCTT
AGACATGNTCAATACTGTACTCGTCTACGTGCTGTGAGCGATAGACACAG
CGGGGCACACGTGTGATCCTGCTCGTGATGTCNCGACGTGTAGATACGGC
GCATGAGCGGTCGAGGTGTGATGTGACGATCATGGATAGGAGTAGNGTAG
CAGGACGTAGTGACTATGAGACGGAGTGAGTACTTNGAGACGANTCGAGC
GGCGCTGCAGNAAGGCTGTATAGCAGTAGAGAGATGACAATATCGCCAGC
TAGAACTANTCGAACAGCGTCACGACGACGTACCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_o05.b1 MSMg01no374_o05.b1 CHROMAT_FILE:
MSMg01no374_o05.b1 PHD_FILE: MSMg01no374_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:16 2005
         (245 letters)



>mm_chr18_3841479_3842121
          Length = 643

 Score =  437 bits (226), Expect = e-127
 Identities = 239/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaaatcatcttgcctgacaatagcaacactatcagaacaattctatcaggagtttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ccagaaatcatcttgcctgacaatagcaacactatcagaacaattctatcaggggtttaa 260

                                                                       
Query: 61  gaccaacttctgccatagtgggagttagagacccacctaggtcacgctgaccttcctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccaacttctgccatagtgggagttagagacccacctaggtcacgctgaccttcctcaa 320

                                                                       
Query: 121 acaaaccaaatcaagcaactgccttcaaaaaccctcaagtaagaaaacaggtaatgatat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 321 acaaaccaaatcaagcaactgccttcaaaaaccctcaagttagaaaacaggtaatgacat 380

                                                                       
Query: 181 ataacttaaagttcactcaaactgcatgtgtatgtgtgtgtaactgttaccacacagtgt 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 a--acttaaagttcactcaaactgcatgtgtatgtgtgtgtaactgttaccacacagtgt 438

               
Query: 241 gcac 244
           ||||
Sbjct: 439 gcac 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 643
Length adjustment: 9
Effective length of query: 236
Effective length of database: 634
Effective search space:   149624
Effective search space used:   149624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)