BAC Information

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BAC

Clone NameMSMg01-375D18
Chromosome18 (Build37)
Map Location 24,219,417 - 24,219,918
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
Downstream geneD030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D18.T7 (MSMg01no375_d18.b1)MSMg01-375D18.TJ (MSMg01no375_d18.g1)
ACCAG480838AG480839
length778799
length of high quality
(start - end)		506 (48 - 553)474 (78 - 551)
definitionCHROMAT_FILE: MSMg01no375_d18.b1 PHD_FILE: MSMg01no375_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:46 2005CHROMAT_FILE: MSMg01no375_d18.g1 PHD_FILE: MSMg01no375_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAATATTTGCCATGTACCCGAGCACTGCTTTTAAAGCACCC
AGTCTGATACTCACTGACCCTGGCTACTAATGTAGCTGCCTTGCAATCCT
TCATCTTGATGTTTATTTTCTGTGTGTACCCCCACATCTTTGTTCCTCTC
CCCTTCTTTCCTGACTTCTTTGTTGCTGATTATATTTTATGACGGCATCT
CATCTCAGTTGTTACTTCTTTGGCAGTCACTCTTGGTTATATTATTTTTG
TCTTGCTTCAGGGCTATAGTATCCATCTTTAATGCACCAATGTTATATTA
CCCACATATATATATTGTTAGAATCTTATGGCAGTGTGCTCCCGTCTCCC
CTCGGGGCCCTTCGAGTACTGCTGTCATATACATTCCCTCTAAACCTAAC
AACATATGGTTATTGCTTCTGCTTTAAGCAGCCCGTTATCTTCATGTGAG
ATTTAAAAAATAAAAACATCTTTCTATGTCCTCATACAATTACTGTCTCT
AGCTCTCATTTCTATGAAGAAATCCAATTCTCTGTCTGATGTCATTGTCC
TATCTGCAAGATCTCTCTCCAATGCTTTCTTGTAAAAAGAATTTTCTCGT
GGAGGAACTCCTTCTCTTTTTATTGTAAAAAAAAAAACACTTTTGTTTTC
GGGTTTGAAAAAAATTTTGCCGATTAAAAAACATGGTAAAAGTCTCTATT
TTTAAAATTCCCCCCCCACATTTAAAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCTAGATCTTTGCAAA
GAGTTCTTGGGCTTAACACCAAAAATATGGTCCACAAAGAGTGAAGCCAG
ATTTCAACAAAATTAAAAACTTTTGCTCCACCCACAAAAATCTGATAAAT
GGAATGAAAATACAACCTACAAATAAATCAAACCTTCTGACAAGGTTTAG
TATCTGGAATATATACTCTCAAAACACAGTCGTTAAAAAATACAACCCAG
TTTGAAAACAAGCAAAAATCATTTCTCAGTGGTATATTTCTTACCTATCA
CAAGTGAGGTGCTGGGTTTTATCCCAATGACCATCTAAAAACAAACAAAA
TGCTCAACACCATTAGCCATTAGGAAAAAGTACATTAAAACAACAGTAAG
CTATTGCATGCCTATCGGAATGGGTAGTACAAAAAACAATAACATAATGT
GTGAAGGTCCAGGCCAGGCAGAGCTAAATAGCACCCCCCAACACACCAGC
CTAATCTACCTAAGACCTTGTTTCAGAAAAACCAAAGAGTACCGAACACT
AGAACCCTGAACTTGAAAAGTTTATTAAGCTTTTCTTTTGGAATTTTCCA
AAACTGGGAAGTAACCCGTAGGCCCCAAAATTTTTTTTTTTTTATAAAAA
AATCTATTTTATCTAATCTCTAAAAAGGGCAGTCACCTTGGTTATTGGTT
CTCTTATATCACCCCCTAAAAAGGAGCTTTTCAAACTCTTTGTTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d18.b1 MSMg01no375_d18.b1 CHROMAT_FILE:
MSMg01no375_d18.b1 PHD_FILE: MSMg01no375_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:46 2005
         (506 letters)



>mm_chr18_24219213_24220118
          Length = 906

 Score =  940 bits (486), Expect = 0.0
 Identities = 498/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaatatttgccatgtacccgagcactgcttttaaagcacccagtctgatact 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaataggtggcatgtacccgagcactgcttttaaagcacccagtctgatact 264

                                                                       
Query: 65  cactgaccctggctactaatgtagctgccttgcaatccttcatcttgatgtttattttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactgaccctggctactaatgtagctgccttgcaatccttcatcttgatgtttattttct 324

                                                                       
Query: 125 gtgtgtacccccacatctttgttcctctccccttctttcctgacttctttgttgctgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgtacccccacatctttgttcctctccccttctttcctgacttctttgttgctgatt 384

                                                                       
Query: 185 atattttatgacggcatctcatctcagttgttacttctttggcagtcactcttggttata 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattttatgatggcatctcatctcagttgttacttctttggcagtcactcttggttata 444

                                                                       
Query: 245 ttatttttgtcttgcttcagggctatagtatccatctttaatgcaccaatgttatattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatttttgtcttgcttcagggctatagtatccatctttaatgcaccaatgttatattac 504

                                                                       
Query: 305 ccacatatatatattgttagaatcttatggcagtgtgctcccgtctcccctcggggccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccacatatatatattgttagaatcttatggcagtgtgctcccgtctcccctcggggccct 564

                                                                       
Query: 365 tcgagtactgctgtcatatacattccctctaaacctaacaacatatggttattgcttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgagtactgctgtcatatacattccctctaaacctaacaacatatggttattgcttctg 624

                                                                       
Query: 425 ctttaagcagcccgttatcttcatgtgagatttaaaaaataaaaacatctttctatgtcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttaagcagcccgttatcttcatgtgagatttaaaaaataaaaacatctttctatgtcc 684

                                 
Query: 485 tcatacaattactgtctctagc 506
           ||||||||||||||||||||||
Sbjct: 685 tcatacaattactgtctctagc 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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