BAC Information

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BAC

Clone NameMSMg01-375F07
Chromosome7 (Build37)18 (Build37)
Map Location 30,909,737 - 30,910,22235,773,895 - 35,774,334
singlet/doubletsingletsinglet
Overlap geneZfp382
Upstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260
Downstream geneZfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F07.T7 (MSMg01no375_f07.b1)MSMg01-375F07.TJ (MSMg01no375_f07.g1)
ACCAG480912AG480913
length753738
length of high quality
(start - end)		490 (55 - 544)440 (86 - 525)
definitionCHROMAT_FILE: MSMg01no375_f07.b1 PHD_FILE: MSMg01no375_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:53 2005CHROMAT_FILE: MSMg01no375_f07.g1 PHD_FILE: MSMg01no375_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:53 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,909,737 - 30,910,222)(35,773,895 - 35,774,334)
sequence
NNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAAGCCCAAGGTCTTGCTAAGGACGAACTAGGACTG
TTGGAACACTGGCGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAG
GCACTTATGATAGGAAAATATTGAAAGAGAGCACGTGGATCCATACACTA
GACTAACGCGGGAATGGAACACGGGAATGAAAAATTACTGTATGGGTAGG
GAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATG
AGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTCGACCAAAGAGCGT
AGCAGACATAGATAAACATGGTTAACAGATTTTCACAACACAAAGCCAAT
TAAGAGAAACTAAGGAAAGGTACATGTCTCCTAAAATTACTTGCATCTTA
AACAGAAAATAGGATCTGAGGTTATGTTCAGGGTTAGAATAATGGGGAAA
ATCAGAAGACGGCTTCAACTAATCAGAAAACACAAACCCATGGCAGAGGT
GGAACCAGCCAGATGTCATTCCAGAAAGGGGAAACTTTAAACTAATTACA
AGGACGCTTACTGCGATAAGAATGTATACCCTTTAACTACAGTATAGAAC
TGATAAGGATAAGGGGCTTCTCGCCTGTGGTCCTCCGGAACTGAAAAAGG
ACTGTCCTGCACTGCTTGTGAACGAAGAACCCCCTGCAAAGAACATTTGG
ACC

NNNNNNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATATGTAATCT
TCTGGAAACTAGAGAAGTCTAAAAATGAATTAAAGTAATCTTGAAAAGTT
TGAGTCAAACAATTCAGTTTCTGTGTTATGGATTTATGCAAATCTAGTCT
ATACATTAAGCCTTTATTCAAAGCATTAGTAGTATGTGAAATGACTAAAG
TAGCAGTAGGCAAATATGTCCCAAGAGACCAGATCAGACACCTATTCAGT
TCAGTCACAGTCATTTACTGCAAAGGGTCTGCCACAATGTGGATTCTGGT
GTTTTCTGTATTGTTTTTTAGCAGCAGAATGTTTTTCAAAAGCTTGATGT
GGAGGAGAACTGTAAAGTATACTTTGGGATGCTTAAACTGAGTATTCAAG
TTTAGGTGATTATGATGAACAGCTTAGTAAACTAATCCATAATAAACAGA
AGCTACGAATTCTAGGTCTCAGCAGTGTGGGGAAGAGGATTGCTCATGAT
TGAAGCTAATCAAGGGATTGAAGTGCAGGTTAAACTAACGTGAAACTCTG
TTTCAATTAACCCCAACTAAATCAAGCAAAAAAATCTTTATCTTAATTTT
AAAAAAAATTCCTGGGGCTGGAAAAAAACTCCAGGTTAAAAAACCACTGG
TCTTCCAAAGGCCTAATTTAACCTTTTACCACCGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f07.b1 MSMg01no375_f07.b1 CHROMAT_FILE:
MSMg01no375_f07.b1 PHD_FILE: MSMg01no375_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:53 2005
         (490 letters)



>mm_chr7_30909533_30910422
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 484/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcccaaggtcttgctaaggacgaactaggactgttggaacactggcggacg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcccaaggtcttgctaaggacgaactaggactgttggaacactggcggacg 264

                                                                       
Query: 65  gctttagctatgtcagaattcaatcttaaaaggcacttatgataggaaaatattgaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttagctatgtcagaattcaatcttaaaaggcacttatgataggaaaatattgaaaga 324

                                                                       
Query: 125 gagcacgtggatccatacactagactaacgcgggaatggaacacgggaatgaaaaattac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcacgtggatccatacactagactaacgcgggaatggaacacgggaatgaaaaattac 384

                                                                       
Query: 185 tgtatgggtagggaacgctagactccaggaggagagcttccttgaaactcttttgcctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtatgggtagggaacgctagactccaggaggagagcttccttgaaactcttttgcctca 444

                                                                       
Query: 245 tgagtgacttttaagcctctcggcttgtccagttgactcgaccaaagagcgtagcagaca 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 tgagtgacttttaagcctctcggcttgtccagttgactcgaccagagagcgtagcagaca 504

                                                                       
Query: 305 tagataaacatggttaacagattttcacaacacaaagccaattaagagaaactaaggaaa 364
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagctaaacatggttaacagattttcacaacacaaagccaattaagagaaactaaggaaa 564

                                                                       
Query: 365 ggtacatgtctcctaaaattacttgcatcttaaacagaaaataggatctgaggttatgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtacatgtctcctaaaattacttgcatcttaaacagaaaataggatctgaggttatgtt 624

                                                                       
Query: 425 cagggttagaataatggggaaaatcagaagacggcttcaactaatcagaaaacacaaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagggttagaataatggggaaaatcagaagacggcttcaactaatcagaaaacacaaacc 684

                 
Query: 485 catggc 490
           ||||||
Sbjct: 685 catggc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_f07.g1 MSMg01no375_f07.g1 CHROMAT_FILE:
MSMg01no375_f07.g1 PHD_FILE: MSMg01no375_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:53 2005
         (440 letters)



>mm_chr18_35773695_35774534
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaatatgtaatcttctggaaactagagaagtctaaaaatgaattaaagtaatcttgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 640 ttgaatatgtaatcttctggaaactagagaagtctaaaaatgaattaaagtaatctcgaa 581

                                                                       
Query: 61  aagtttgagtcaaacaattcagtttctgtgttatggatttatgcaaatctagtctataca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aagtttgagtcaagcaattcagtttctgtgttatggatttatgcaaatctagtctataca 521

                                                                       
Query: 121 ttaagcctttattcaaagcattagtagtatgtgaaatgactaaagtagcagtaggcaaat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttaagcctttattcaaagcactagtagtatgtgaaatgactaaagtagcagtaggcaaat 461

                                                                       
Query: 181 atgtcccaagagaccagatcagacacctattcagttcagtcacagtcatttactgcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atgtcccaagagaccagatcagacacctattcagttcagtcacagtcatttactgcaaag 401

                                                                       
Query: 241 ggtctgccacaatgtggattctggtgttttctgtattgttttttagcagcagaatgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggtctgccacaatgtggattctggtgttttctgtattgttttttagcagcagaatgtttt 341

                                                                       
Query: 301 tcaaaagcttgatgtggaggagaactgtaaagtatactttgggatgcttaaactgagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcaaaagcttgatgtggaggagaactgtaaagtatactttgggatgcttaaactgagtat 281

                                                                       
Query: 361 tcaagtttaggtgattatgatgaacagcttagtaaactaatccataataaacagaagcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcaagtttaggtgattatgatgaacagcttagtaaactaatccataataaacagaagcta 221

                               
Query: 421 cgaattctaggtctcagcag 440
           ||||||||||||||||||||
Sbjct: 220 cgaattctaggtctcagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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