NTTTTATTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTAGGTCTTCTCCTGAAAATGTACCTCGTACTGGT
AACATAGAAAGTGAATGATATCCAAAGCATCAGAGATTGGTTAAAGTAAC
TATATTTCATTAGACTCAGCCACAGGGAAAGCTCTCACTCCTACCTCCTG
CCCTATGATGATAGATGAGAAAGAATAGCATCAAGAGGAAAAGTTGGATT
CAAACTTTGACTACAGCATCAAAGCATGAACAGCTGCAAGGATTTTTGAT
GCTCTTGATCTCAGAATTGAGTTTTCTCACAACCCCAGGCTTCAGGGATC
CTGAGCTGGGGTGGTAAGAACACTTCACCACTCTCTCATTTTGCCTGGAA
GGTGGGGGTGGATCGGGTGCATGCATCAGGGAAAAGACTTCTCACTAGTC
CTTTTCAGAGAGTGTTGGGTGGAGTGTCTCCTCCTACATGTCAGCACTTG
CAGCTATAATGCAGTGTCTGATACAGCCCCCTTCCCAGAAACTCATCCCT
CTGCCAAATTGATTTCCAACAGGACTTGATCCAAAAGGATCATAACCTAG
GGTAACACGGTCTGAGGAATTTAGTCCCATATACACCTCCTTTCTATAAG
AAAAAAGTTCCCCCCCCCTCCTAACTTTTAACCCCCTATGGTCCTGTTTT
CTTTCCCCATGCGTAAATATGCCGTTCATAGTGGTTTCCCCCTACCCCCT
TGAGTTCCTAGGGATGTCATTTGTGCTG

NNNNCCGATTCTANNGNTANNCCTGNCGNCCGCCTGGTTTTCNACTTTAN
GTGACCTATANAATATCCGCGNAATTCCCAAAGGACTGCCAGCATCTTCA
ANACANATAGACTCTACTTTGCGATANCTACNGGAAGGCTTAGATATGTG
TGGAGTGGGTGAATGTGGATGTGAGTGATAAAGTGAGTTGAATGGAGTAT
ATTGNNTCTNNTNTTCNNTTTCNTTTTNNAAAACNAAAAATNCCAAATTC
TCAAATTTNNAATTTTCCCCCCCCCCAAATTCTTTTTNTTTNTTTTTCNC
NNNNNCCTCCCCCTCCTCCTCTTTTTTTTTTTCCCCCCCCTCCNNNNCCN
NNNCNCCCCCNCNCCCCCCCCCTNNCNNNNTCCCCCTCCNCNNCTTCCCC
CCCCCCCCNCCCNCCCNCCCCCCCNNCCCCCCCCCCCNNNNNTCCCTCCC
CCCCCCCCCTTTNCCCCCCCTCTCCTCCCTTCCTTCNNNNNNCNCCCCCC
CTCTCTTTTCCCCNCCTCTTNCCNCTCCCNNCCTCCCCCTTTCCCCCCCN
CTCCCTTTTCNNNTTCTTNCCCTTCTCTCNCCTCCCCCCCTCTCTCCCCC
TCTTCCCCCCCCNNCCCCCCCCNCCCTTCTTCTTTCTNTTTCCTNNCCCT
NCNCTTCTTTTCCCNNCNCNNNCCCCCTCTCTCTCTTCTCCCCTTTTTTT
TAATTTTTTTTTTTTTTGT

Query= MSMg01no375_j18.b1 MSMg01no375_j18.b1 CHROMAT_FILE:
MSMg01no375_j18.b1 PHD_FILE: MSMg01no375_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:15 2005
         (430 letters)



>mm_chr18_40703854_40704686
          Length = 833

 Score =  768 bits (397), Expect = 0.0
 Identities = 422/431 (97%), Gaps = 5/431 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaggtcttctcctg-aaaatgtacctcgtactggtaacatagaaagtgaat 62
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctagggcttctcctgaaaaatgtacctcgtactggtaacatagaaagtgaat 263

                                                                       
Query: 63  gatatccaaagcatcagagattggttaaagtaactatatttcattagactcagccacagg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatatccaaagcatcagagattggttaaagtaactatatttcattagactcagccacagg 323

                                                                       
Query: 123 gaaagctctcactcctacctcctgccctatgatgatagatgagaaagaatagcatcaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaagctctcactcctacctcctgccctatgatgatagatgagaaagaatagcatcaaga 383

                                                                       
Query: 183 ggaaaagttggattcaaactt--tgactacagcatcaaagcatgaacagctgcaaggatt 240
           |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||
Sbjct: 384 ggaaaagttggattcaaactttctgactacagtatcaaagcatgaacagctgcaaggatt 443

                                                                       
Query: 241 tttga-tgctcttgatctcagaattgagttttctcacaaccccaggcttcagggatcctg 299
           ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 ttt-actgctcttgatctcagaattgagttttctcacaaccccaggcttcaaggatcctg 502

                                                                       
Query: 300 agctggggtggtaagaacacttcaccactctctcattttgcctggaaggtgggggtggat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 agctggggtggtaagaacacttcaccactctctcattttgcctggaaggtgggggtgggt 562

                                                                       
Query: 360 cgggtgcatgcatcagggaaaagacttctcactagtccttttcagagagtgttgggtgga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cgggtgcatgcatcagggaaaagacttctcactagtccttttcagagagtgttgggtgga 622

                      
Query: 420 gtgtctcctcc 430
           |||||||||||
Sbjct: 623 gtgtctcctcc 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 833
Length adjustment: 9
Effective length of query: 421
Effective length of database: 824
Effective search space:   346904
Effective search space used:   346904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)