Query= MSMg01no375_m15.b1 MSMg01no375_m15.b1 CHROMAT_FILE:
MSMg01no375_m15.b1 PHD_FILE: MSMg01no375_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:29 2005
(454 letters)
>mm_chr18_78517463_78518316
Length = 854
Score = 623 bits (322), Expect = 0.0
Identities = 370/390 (94%), Gaps = 8/390 (2%)
Strand = Plus / Minus
Query: 5 agcagtttactaaaagagtaagcagcacacatatgaaagataataggatcaataacagtg 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 390 agcagtttactaaaagagtaagcagcacacatatgaaagataatagggtcaataacattg 331
Query: 65 aaagatgctttgatatggcatacaaggaagcgggactcaggtcacaggcattaaaataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaagatgctttgatatggcatacaaggaagcgggactcaggtcacaggcattaaaataga 271
Query: 125 tgacctaaaagtatgatagaggtagaggatacagaagccactgatttcgtctccatcact 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgacctaaaagtatgatagagatagaggatacagaagccactgatttcgtctccatcact 211
Query: 185 gaaaaggatagatggatggatggatagacagacagacagacagacagacagatagataga 244
||||||||||||| |||||||||||||| ||| ||| ||| ||| ||| |||||||||||
Sbjct: 210 gaaaaggatagatagatggatggatagatagatagatagatagatagatagatagataga 151
Query: 245 tagatagat---ta-----atgattgatagttgatagatagatgattgataggtgataga 296
||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tagatagatagatagacaaatgattgatagttgatagatagatgattgataggtgataga 91
Query: 297 taaatagacagacaaacagttagatgattgataggtagatgaaagacagacagatagaca 356
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 90 taaatagacagacaaacagatagatgattgataggtagatgaaagacagacagatagata 31
Query: 357 gacagacagatagatatataattgatagat 386
||||||||||||||||||||||||||||||
Sbjct: 30 gacagacagatagatatataattgatagat 1
Score = 105 bits (54), Expect = 8e-27
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 380 gatagat-gatacatagatagatagatagatagatagatagatagatagatagatagata 438
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gatagatggatggatagatagatagatagatagatagatagatagatagatagatagata 141
Query: 439 gataga 444
||||||
Sbjct: 140 gataga 135
Score = 105 bits (54), Expect = 8e-27
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 395 gatagatagatagatagatagatagatagatagatagatagatagatagataga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatagatagatagatagatagatagatagatagatagatagatagatagataga 135
Score = 101 bits (52), Expect = 1e-25
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 399 gatagatagatagatagatagatagatagatagatagatagatagatagata 450
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatagatagatagatagatagatagatagatagatagatagatagatagata 137
Score = 101 bits (52), Expect = 1e-25
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 387 gatacatagatagatagatagatagatagatagatagatagatagatagatagatagata 446
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gatagatagatggatggatagatagatagatagatagatagatagatagatagatagata 145
Query: 447 gata 450
||||
Sbjct: 144 gata 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 7
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_m15.g1 MSMg01no375_m15.g1 CHROMAT_FILE:
MSMg01no375_m15.g1 PHD_FILE: MSMg01no375_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:29 2005
(379 letters)
>mm_chr18_78322674_78323452
Length = 779
Score = 683 bits (353), Expect = 0.0
Identities = 374/385 (97%), Gaps = 8/385 (2%)
Strand = Plus / Plus
Query: 1 tcagcaacttgaaaccatctctacctatcccttgctggtcaggtaaaatacaggcgagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcagcaacttgaaaccatctctacctatcccttgctggtcaggtaaaatacaggcgagtc 256
Query: 61 cagcaactgctctggtattgtcttctaaatgcttcctgggtgagggcccacactcctgca 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagaaactgctctggtattgtcttctaaatgcttcctgggtgagggcccacactcctgca 316
Query: 121 atcacagcacatgggacgttgaggcaggaagactgtgagtttgaggccagcctggttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcacagcacatgggacgttgaggcaggaagactgtgagtttgaggccagcctggttaca 376
Query: 181 cagtgagattctatccc------tttccagcctttcaaatactgtccagtcccactcggt 234
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 377 cagtgagattctatcccaaacact--ccagcctttcaaatactgtccagtcccactcggt 434
Query: 235 ctggatggggctggacaacaagattaggatccagcaattctctttactcatgacaaatct 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 435 ctggatggggctggacaacaagattaggatccagcaattctctttactcatgacgaatct 494
Query: 295 ctctctttccagaatgattttgggaaagtttattagatatttaatgtgagaggagggaag 354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 ctctctttccagaatgattttgggaaagtttattagatatctaatgtgagaggagggaag 554
Query: 355 gactgggtagcaaaatggaaagagg 379
|||||||||||||||||||||||||
Sbjct: 555 gactgggtagcaaaatggaaagagg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
