Query= MSMg01no375_m23.b1 MSMg01no375_m23.b1 CHROMAT_FILE:
MSMg01no375_m23.b1 PHD_FILE: MSMg01no375_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:31 2005
(270 letters)
>mm_chr18_69664920_69665591
Length = 672
Score = 462 bits (239), Expect = e-135
Identities = 258/265 (97%), Gaps = 2/265 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaaggaataaatgattccacaacgaaagctggaaaagctttttaaggaagga 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaattctcaaggaagaaatgattccacaacgaaagctggaaaagctttttaaggaagga 299
Query: 64 cccaaactcgggtga--cccctgtgggaattttatctgcaccctcactttctccaagtga 121
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cccaaactcgggtgacccccccgtgggaattttatctgcaccctcactttctccaagtga 239
Query: 122 cacatccttaagcaaaatatatggagtatgtgaacgtgtgtgtatatatacgtatgcgtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 238 cacatccttaagcaaaatatatggagtatgtgaacgtgtgtgtatatatacgtatgcatg 179
Query: 182 catgtgtgtatgtgcgtgcgtgtgggtatgcatgtgtgtgtgcacacatgagtgtgtgtg 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 catgtgtgtatgtgcatgcgtgtgggtatgcatgtgtgtgtgcacacatgagtgtgtgtg 119
Query: 242 tgtgtgtgtgtgtgtgtttgtgtgt 266
||||||||||||||||| |||||||
Sbjct: 118 tgtgtgtgtgtgtgtgtgtgtgtgt 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 672
Length adjustment: 9
Effective length of query: 261
Effective length of database: 663
Effective search space: 173043
Effective search space used: 173043
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no375_m23.g1 MSMg01no375_m23.g1 CHROMAT_FILE:
MSMg01no375_m23.g1 PHD_FILE: MSMg01no375_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:31 2005
(344 letters)
>mm_chr18_69502475_69503219
Length = 745
Score = 629 bits (325), Expect = 0.0
Identities = 340/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 1 aggagggggaatcttacaaacctaaaagctaaaagggatttttatgggattatctaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagggggaatcttacaaacctaaaagctaaaagggatttttatgggattatctaatct 260
Query: 61 agtctctgcattttacggcaaaggtcactggcatggagtctgaggtcacagtgctgattg 120
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctctgcattttatggcaaaggtcactggcatggagtctgaggtcacagtgctgattg 320
Query: 121 gaggtagagccaatggaatattttttcctacgccaatgcttgtgatcttttcattaccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gaggtagagccaatggaatattttttcctacgccaatgcttgtgatcttttcattacagt 380
Query: 181 gatttttt-ccccccagagcctgtcgagggcttactctgagaaccagagataatgtttgt 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gatttttttccccccagagcctgtcgagggcttactctgagaaccagagataatgtctgt 440
Query: 240 gataatgcactataaagaggtggctaaatgtaaaatattattttaggatgaaaatgtgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataatgcactataaagaggtggctaaatgtaaaatattattttaggatgaaaatgtgga 500
Query: 300 atgggggataaaacactggagtcctcatgatgtgtgaaatagccc 344
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggggataaaacactggagtcctcatgatgtgtgaaatagccc 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space: 246560
Effective search space used: 246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
