BAC Information

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BAC

Clone NameMSMg01-377F08
Chromosome18 (Build37)
Map Location 67,839,623 - 67,840,056
singlet/doubletsinglet
Overlap genePtpn2
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1
Downstream geneSeh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F08.T7 (MSMg01no377_f08.b1)MSMg01-377F08.TJ (MSMg01no377_f08.g1)
ACCAG482440AG482441
length760765
length of high quality
(start - end)
438 (51 - 488)416 (81 - 496)
definitionCHROMAT_FILE: MSMg01no377_f08.b1 PHD_FILE: MSMg01no377_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005CHROMAT_FILE: MSMg01no377_f08.g1 PHD_FILE: MSMg01no377_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGCCATTTTTGAGACAGTGTTTTTTACTGGACCTGGAGC
TAATGACTTGGATAAGCTGGTGGTCAGTAAACTATATTAAACCCACCTAA
CTGCCCTTCGCCACGTTCTGGGGTCACAGACATGTGCTACTCTGCTCATC
TTTTACCCATGCACTAGGAGTCAGTGCTCATGCTTGCCATGGCCCCAGTT
CGTTGGCATTCTCTTCTTTTTTGAGGTGAATCTCACTAGGTAACCCCGGC
TGGCTCAGACGTGCAGACAACAGGCATGAGTCACTCCTTCAGGATTGCTT
TCCTTTGTCATTTCTCCCTTTTAAGAGGGAGACTTTACTGTATTCTTCAT
TTCTTCCTTTTTTATTTTGGATAGGGTCTAACTCCGTAGCCCAGGCTAAC
CTCAAACTTGGAGCANATTTTCTGCCCCAACTTACTTAGTGTTGGGATGA
AAGGTACGAGTCAAGCCTGGGTGAGACTTTCTAGGGGATCCTTATAATTG
TCATGGACACCCATGTACCTGCCGGAACTATAAGCCAATTAACTATTATA
AGTAAAGGGGTAAAAAAAAAAAAACCCAAAAGTTTGGGAAATAACTCCAA
AATAATGGGGGCCATAAAAAAACGTAAAACCAATTAACAGGCTAACGGGG
TAAAAACCCGGCTGCCCCTAAAAGATAACAGGTTTGCTCCCCCCCCCAAA
TCAACGTTCT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAAACAACCAGTGAG
CTACACATCATTCATCTCACAAAGTCAGGGGCTCAAGCAGTCTAAGCTAC
AGAACAACAACTTTTCCTAAAAACAAATTAATAATAAAATGCCGGCTAGT
TGGCACACATCTCTAATCCCTGCAGTAGGGAGGCTGAGATAGTCTTGATG
AGATCAAGAGCAGCCTGGTTCTCATAGTGAGTTCTAGGATAGTCTGAAGT
ACATAGTGAAAATTTGCCTAATCATAAAATATAGAGGAAAACTACAATGA
TTATAAAATGTTCGTGGGTTAGAAGATTCTATTATAGAAATGTGGATTTT
ACTGTTCTATAGATTAAATTAATCTCATTAAAAGCACACAGTTGCTGATG
GGTTAGTTCTTTGGTATATTAAAACTGTATGAAGGGGGCTGGAGAGATGG
CTCANCAGTTAAAAGCACTGCTCTTCCAGAGGTCCTGAGGTCAATTTCCA
GCAACCACATGGTGGGGTCAAACCATTCCGAAAGAAAATTGACGCCCTCT
TCTGTGGGGGTGGAAAAAAAAAACATGGAATCCCATTCATTAAAAAATTT
TTATAACAACCGGCTCGCACCGGCTTTTTTATTTCCCAGCCTTCAAAGTA
TCCCCCCATTTCTCCTTGGCGGGCTACCCCTCAATAAAGGTATATTTGGT
TTCCCGTTTTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f08.b1 MSMg01no377_f08.b1 CHROMAT_FILE:
MSMg01no377_f08.b1 PHD_FILE: MSMg01no377_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:28 2005
         (438 letters)



>mm_chr18_67839419_67840256
          Length = 838

 Score =  810 bits (419), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagccatttttgagacagtgttttttactggacctggagctaatgacttggata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagccatttttgagacagtgttttttactggacctggagctaatgacttggata 264

                                                                       
Query: 65  agctggtggtcagtaaactatattaaacccacctaactgcccttcgccacgttctggggt 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 agctggtggtcagtaaactatattaaacccacctaactgcccttcaccacgttctggggt 324

                                                                       
Query: 125 cacagacatgtgctactctgctcatcttttacccatgcactaggagtcagtgctcatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagacatgtgctactctgctcatcttttacccatgcactaggagtcagtgctcatgct 384

                                                                       
Query: 185 tgccatggccccagttcgttggcattctcttcttttttgaggtgaatctcactaggtaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgccatggccccagttcgttggcattctcttcttttttgaggtgaatctcactaggtaac 444

                                                                       
Query: 245 cccggctggctcagacgtgcagacaacaggcatgagtcactccttcaggattgctttcct 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 cccggctggctcagacgtgcagacaacaggcatgagtcactctttcaggattgctttcct 504

                                                                       
Query: 305 ttgtcatttctcccttttaagagggagactttactgtattcttcatttcttcctttttta 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgtcatttctcccttttaggagggagactttactgtattcttcatttcttcctttttta 564

                                                                       
Query: 365 ttttggatagggtctaactccgtagcccaggctaacctcaaacttggagcanattttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 ttttggatagggtctaactccgtagcccaggctaacctcaaacttggagcaaattttctg 624

                         
Query: 425 ccccaacttactta 438
           ||||||||||||||
Sbjct: 625 ccccaacttactta 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)