Query= MSMg01no377_g04.b1 MSMg01no377_g04.b1 CHROMAT_FILE:
MSMg01no377_g04.b1 PHD_FILE: MSMg01no377_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:32 2005
(270 letters)
>mm_chr18_76119407_76120077
Length = 671
Score = 480 bits (248), Expect = e-140
Identities = 260/264 (98%), Gaps = 1/264 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgttattcctgtagtttgcatttggaggccttgagtcggttactttgcatat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgttattgctgtagtttgcatttggaggccttgagtcggttactttgcatat 264
Query: 65 ctttgattacaaatctgttctgtgtaatttgtcgatttgtgtactcgcctcctctcgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgattacaaatctgttctgtgtaatttgtcgatttgtgtactcgcctcctctcgctg 324
Query: 125 acttttttttt-atgatcctctttatggtcactaaggagccacaaggccatgaatcaccc 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttttttttttatgatcctctttatggtcactaaggagccacaaggccatgaatcaccc 384
Query: 184 ctctcccagtagtcccggtgcaggcaggccacctgtgtgggcacactgctcaccccccac 243
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctcccagtggtcccggtgcaggcaggccacctgtgtgggcacactgctcaccccccaa 444
Query: 244 cccccagggctctccttcacacgg 267
||||||||||||||||||||||||
Sbjct: 445 cccccagggctctccttcacacgg 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space: 172782
Effective search space used: 172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no377_g04.g1 MSMg01no377_g04.g1 CHROMAT_FILE:
MSMg01no377_g04.g1 PHD_FILE: MSMg01no377_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:32 2005
(421 letters)
>mm_chr18_76247101_76247921
Length = 821
Score = 799 bits (413), Expect = 0.0
Identities = 419/421 (99%)
Strand = Plus / Minus
Query: 1 taggcatcttattattcacttgctcccttccagctctgaccttaagagtactcttaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggcatcttattattcacttgctcccttccagctctgaccttaagagtactcttaacct 562
Query: 61 tcctcctccagcttgctaatggggaaataaatcttgggagagtatcttaaattcttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctcctccagcttgctaatggggaaataaatcttgggagagtatcttaaattcttcttt 502
Query: 121 atcacagactgtatcaccgagataataagaccagccttcagagtaaccattaagccacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcacagactgtatcaccgagataataagaccagccttcagagtaaccattaagccacaa 442
Query: 181 aaggtgtggtcatcacttatgatttttgagccttaattgctagacagacactttaagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtgtggtcatcacttatgatttttgagccttaattgctagacagacactttaagtgg 382
Query: 241 gaagtctgtctaatgagcccagtcattaaaacatcaaaaactgttatctggggtttctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtctgtctaatgagcccagtcattaaaacatcaaaaactgttatctggggtttctat 322
Query: 301 tttagttagacattacattattttaataagggggctgcatttcttgtcacaagctttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagttagacattacattattttaataagggggctgcatttcttgtcacaagctttggt 262
Query: 361 aatggaggcggaagcaaccctgtggggaacgagggggaggggaattgacttgtctttgga 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aatggaggtggaagcaaccctgtggggaacgagggggaggggaattgacttgcctttgga 202
Query: 421 a 421
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
