BAC Information

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BAC

Clone NameMSMg01-377J07
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377J07.T7 (MSMg01no377_j07.b1)MSMg01-377J07.TJ (MSMg01no377_j07.g1)
ACCAG482628AG482629
length807762
length of high quality
(start - end)
265 (49 - 313)331 (79 - 409)
definitionCHROMAT_FILE: MSMg01no377_j07.b1 PHD_FILE: MSMg01no377_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:49 2005CHROMAT_FILE: MSMg01no377_j07.g1 PHD_FILE: MSMg01no377_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACAGGTAACTCATCACTCAGGGACTTCAGGCAGAAAACTAGC
CAGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCAT
CGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCC
ACCCTACCCCTCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGT
GGGGGAGGGGGAGGTGCTGTGANCGAATTTAGATAGCTCGAATAAATAAA
TAGGTGGAGACTTCTTTTTTTTTTTNACNCNACCGAGCACAAGGTGAAAG
AGGGAAATTGTTTCGAAAAGGAGCGAGGGCAGATTGTCTTCCCTTGCTGG
GACCGTTTATGTCCCCCCCCAAAATGTTTTTTGCTCTCTTTGTCGGTTTA
ACGTTTTTTTATTCGTTGATTGGTCTCCCCGATTACTCTTGCCTTCTTTT
CCCTTTATTCGTCTTTGCGGTTTTTTTCTCTTTCTGCCTCTGTCGATATA
TTTCTTATTTTCCTTCGTTTTTACTGCCTCTCTCGTCACCTCCTGCTTTT
TCCCCTTCTTTTGCTTTTTTCTTCTTTCCCTTTCTTTCCCTTTCTTTCCA
TCTTTTTCCTCCATCACCCATTCCACTGTTTTATCTCCCCTTTGTTACTA
TACCCGCCCTTTTTTTTTCTCTCCTTTCCTCTCTTGAATTTATTTATGTA
CCCTTTGTTTTTCCCGTGCTCTTTCTTCTATTCCTTTCTTTGTGCCCTTA
TCTTTTN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAG
GTCCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCT
CATACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACA
GAAAGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCC
TGTCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGG
TTTGGAATTTCTACTTCATGTTTTTTTTTTTTTTTGAGACAGGGTTTCTC
TGTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTG
TGTGTGTGCGCGTGNGTCGCGCCCCCCCTCTTCCCCTTTTTGTTATTCCC
CCCCTTCCTTTTTCCCCTTTTTTTTTCTTCTTCCCCCTCTTTCCTCTCCT
TTTCTCCTTCCCTTTTCTTCCCTTTTCCCCCCCCTCTTTTTTCCCCCCTT
TTCCTCCTTTTTTTCCTCTCTTCCTTCTCCTTCCCTCCCTCCTTTTTCCT
CCCTTCTCTTCTACTCCCCCCTTTCTTCCCCCCCCCCTTTTCCCCTCCCT
TTCCTTTTTTTTTTTTTTCCCCACTCTTCATTCCCCACCTCCCTATTTCC
CATTCTCTTCTTCCCCCCTCTTTTTCCCCCCATTCTCTTTTTTTCTTATT
TCATCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_j07.g1 MSMg01no377_j07.g1 CHROMAT_FILE:
MSMg01no377_j07.g1 PHD_FILE: MSMg01no377_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:49 2005
         (331 letters)



>mm_chr18_40467476_40468205
          Length = 730

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)