BAC Information

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BAC

Clone NameMSMg01-377J18
Chromosome18 (Build37)
Map Location 62,216,085 - 62,216,517
singlet/doubletsinglet
Overlap genenone
Upstream genePdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377J18.T7 (MSMg01no377_j18.b1)MSMg01-377J18.TJ (MSMg01no377_j18.g1)
ACCAG482650AG482651
length768763
length of high quality
(start - end)		424 (45 - 468)437 (75 - 511)
definitionCHROMAT_FILE: MSMg01no377_j18.b1 PHD_FILE: MSMg01no377_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:51 2005CHROMAT_FILE: MSMg01no377_j18.g1 PHD_FILE: MSMg01no377_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATCTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTACCCATGTTTTCGAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATTGATTCGCATTC
TTCTACATGATAACCGCCAGTTGTGCCAGCACTATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGACCAAGTGACC
ATAGGTGTGTGGGTTCCTTTCTGGGGGGAGTGATCTCTAAGTTTCGTATG
TTAAGACCTCTTGCAATGTGCCTGCGTTTACTCCCGCTTTTTTCTATTTA
TCCACTGTTTTCCCTTTTTTCCCATTTTTCCCCACCCTTTTTCTTTCCCC
TTCTTTTTCCCTATTTTCCTCTTTTTTTCTACTTTCTTTTCCTCCCTCTT
TCTATTTTCCCCCTGTCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACACAGATAA
ACATTGTCTTACACACACACACACACACACACACACACACACACACACAC
ACACACCTCACTGAAGTGTTGTTTTGAGAGTCTTTCCTGTATTAATTCAG
TTTCTGTGGTGGCACAGGGAAATGGGCACAATTTTGCTCATTCTCTGTGG
GAGGAAACTGATGCTCTTTCTGTGCAGTTGCCATGAAAAATCATTCTGTC
ACGACGCAGAGTCACGATGTAATCCTGGGATTGCTGGATTCCCAGGCCCT
GGGCCCCATAGCAACTTGCTGTTCACCAACAGAGAGAAAATGGTTTGTTC
CATGTCACGTGGCACTGTGCTGGCACAGACTCTGGGCCGACACTGGGAGC
TCACCTCCTCTGTCCCCTTCTCTCCCTTGAGCTTGCCTTACTGGGTACCC
ATTCCAGCACTAGGTTCCAAGGCTCCTGATGGCACCCACCGGCTTGCTCC
CTCTAGGGTTCAGGTATCAGATCCCAGCCATTCTGAATGAACACGGGAAC
ACTAACCTCAGTGTCCTTTATCCTGATGAAGGAAAAGGTCCTGCAAAAAT
ATGGCCTTGCCCTTGAAACAGGATTAATTACAATTCTCCTCGCCTTGTGC
TTTCAAATGGGGACCCTACAAAAATCTTTTTTTTCCCCAACAATGCTATC
CCTTCTTTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_j18.g1 MSMg01no377_j18.g1 CHROMAT_FILE:
MSMg01no377_j18.g1 PHD_FILE: MSMg01no377_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:51 2005
         (437 letters)



>mm_chr18_62215803_62216639
          Length = 837

 Score =  766 bits (396), Expect = 0.0
 Identities = 426/438 (97%), Gaps = 6/438 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacacagataaacattgtcttacacacacacacacacacacacac 60
           ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 715 caggatagccagggctacacagataaacattgtctt----acacacacacacacacacac 660

                                                                       
Query: 61  acacacacacacacacacacacctcactgaagtgttgttttgagagtctttcctgtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acacacacacacacacacacacctcactgaagtgttgttttgagagtctttcctgtatta 600

                                                                       
Query: 121 attcagtttctgtggtggcacagggaaatgggcacaattttgctcattctctgtgggagg 180
           ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 599 attcagtttctgtggtgacacaaggaaatgggcacaattttgctcattctctgtaggagg 540

                                                                       
Query: 181 aaactgatgctctttctgtgc-agttgccatgaaaaatcattctgtcacgacgcagagtc 239
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaactgatgctctttctgt-ctagttgccatgaaaaatcattctgtcacgacgcagagtc 481

                                                                       
Query: 240 acgatgtaatcctgggattgctggattcccaggccctgggccccatagcaacttgctgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 480 acgatgtaatcctgggattgctggattcccaggccctgggccccatagcaacttggtgtt 421

                                                                       
Query: 300 caccaacagagagaaaatggtttgttccatgtcacgtggcactgtgctggcacagactct 359
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 caccaacagagagagaatggtttgttccatgtcacgtggcactgtgctggcacagactct 361

                                                                       
Query: 360 gggccgacactgggagctcacctcctctgtccccttctctcccttgagcttgccttactg 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gggctgacactgggagctcacctcctctgtccccttctctcccttgagcttgccttactg 301

                             
Query: 420 ggtacccattccagcact 437
           ||||||||||||||||||
Sbjct: 300 ggtacccattccagcact 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 18
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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