Query= MSMg01no377_k03.b1 MSMg01no377_k03.b1 CHROMAT_FILE:
MSMg01no377_k03.b1 PHD_FILE: MSMg01no377_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:53 2005
(452 letters)
>mm_chr18_77159305_77160156
Length = 852
Score = 799 bits (413), Expect = 0.0
Identities = 442/455 (97%), Gaps = 7/455 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgagtttcacattcatgtgttacataggctggcttcaggtacaaggggagtta 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagtttcagattcatgtgttacataggctggcttcaggtacaaggggagtta 264
Query: 65 actctgtccacatcaacgcatatttgatgggtgtttgtgctgaaccacctggtttgaagt 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actctgtccacatcaacgcctatttgatgggtgtttgtgctgaaccacctggtttgaagt 324
Query: 125 gaactggaccaacctgtcctcctcaaactctgccctgtcctcaagccttttctcctgcct 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaactgaaccaacctgtcctcctcaaactctgccctgtcctcaagccttttctcctgcct 384
Query: 185 tctttttcccttcagatctcctgaatttctttcttctctagaagaaatgtcccaggtaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttttcccttcagatctcctgaatttctttcttctctagaagaaatgtcccaggtaga 444
Query: 245 gagggccatctttaccttcactttgtacttgctcttcattttatttaattgactcctgac 304
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 445 gagggccatctttaccttcactttgaacttgctcttcattttattttattgactcctgac 504
Query: 305 ctgattatatttttgtgtccctttttaaaaatgtatttatttacatcccagctgttgccc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgattatatttttgtgtcccttttaaaaaatgtatttatttacatcccagctgttgccc 564
Query: 365 cctcccagtccccctcccacagttcctcatcccactcctcctcactcttgccttcgaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctcccagtccccctcccacagttcctcatcccactcctcctcactcttgccttcgaggg 624
Query: 425 tgctccccccccc--a-----ggcctccccttccc 452
||||||||||||| | ||||||||||||||
Sbjct: 625 tgctcccccccccccaccccgggcctccccttccc 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_k03.g1 MSMg01no377_k03.g1 CHROMAT_FILE:
MSMg01no377_k03.g1 PHD_FILE: MSMg01no377_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:53 2005
(439 letters)
>mm_chr18_77201948_77202787
Length = 840
Score = 814 bits (421), Expect = 0.0
Identities = 436/441 (98%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 1 tttgtgcaacagacctcaagattgctttccacttacatagctaaactaaaaactcatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tttgtgcaacagacctcaagattgctttccacttacatagctaaactaaaaactcatttg 496
Query: 61 acttagcttggttaatatttgattatatattagctagggatgagaattatcatcttgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acttagcttggttaatatttgattatatattagctagggatgagaattatcatcttgatt 436
Query: 121 gatgtgtgtacttgatttcgagtgctgtccctgggagggcggaccctgtgggttctctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatgtgtgtacttgatttcgagtgctgtccctgggagggcggaccctgtgggttctctcc 376
Query: 181 atttctctaggctggagctggctccacggaggctggga-gggaggctctcttgctacct- 238
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 375 atttctctaggctggagctggctccacggaggctgggagggggggctctcttgcta-ctg 317
Query: 239 ttctctgctcggcaccagcctcactgggtcttgcaagggttgaagcacatttaagtaaat 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 ttctctgctcggcaccagcctcactgggttttgcaagggttgaagcacatttaagtaaat 257
Query: 299 gtttcctagggtacagacaaatgtctcttgtggtttgatatttttcagaaaatatgaaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtttcctagggtacagacaaatgtctcttgtggtttgatatttttcagaaaatatgaaga 197
Query: 359 ttgggtcaggcatggtagcacacacctatattcccagaattctctctgtggagacagagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttgggtcaggcatggtagcacacacctatattcccagaattctctctgtggagacagagg 137
Query: 419 caggaggatctaaagttcaag 439
|||||||||||||||||||||
Sbjct: 136 caggaggatctaaagttcaag 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space: 357330
Effective search space used: 357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
