BAC Information

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BAC

Clone NameMSMg01-377K12
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K12.T7 (MSMg01no377_k12.b1)MSMg01-377K12.TJ (MSMg01no377_k12.g1)
ACCAG482686AG482687
length759744
length of high quality
(start - end)
347 (51 - 397)216 (79 - 294)
definitionCHROMAT_FILE: MSMg01no377_k12.b1 PHD_FILE: MSMg01no377_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:55 2005CHROMAT_FILE: MSMg01no377_k12.g1 PHD_FILE: MSMg01no377_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTTCCACTGTCCTTTCAGGTCCACATTTGCTCTGGCT
CTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAA
ATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAAGGCTCCACT
CACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGAATT
TGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCAT
GTTTAATTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCTCTGTATA
GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC
AGAAATACACCTGCCTCTGCCTCCCGAGTGCTGTGATTAAAGGCGTGCAC
CACCACGCCAGGCCCCATGTTTAATGCTTAGTAAACATTTAACAAACATT
TAATAACACTTGTGAAGGTCTGAAGATATGGACTATTACTTAACAGTATT
GATTTCTCCTGCTCATGCCCCGCTCTCCTTCTCCATAATTCACCGTCGCC
CTTTGAATCTTAAGACAATCTTTTGTGTGTTGCCCCCAATTTCTTTTTTT
TCCCTCCCTTTCCCTCCCTTCTATTTTCTCCCCTTTTCTTTTCGCCCCCA
TTACCCCCCCCTTTTCCCCCCTTTTTCTTTTCTTCCCTTTTTCCTCCCTC
CTCCCCCCC
NCCCGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGG
ACTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAAC
AGTTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGA
CATGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAAC
ATAGGGAGAAAAGGCAGTGTGGGNGGAGGGGGAGGTGCTGNNNNNNNNTN
NNNNNNNNNNNNNNNTTTTTTTTTTTTTNNNNNNTTTTTTTTTNTTTTTT
TTTTTTNNTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTNNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNNTNNTNTNT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNNTTNTTNNTNTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNNNNNNTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTNTTTTNNTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTCTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k12.b1 MSMg01no377_k12.b1 CHROMAT_FILE:
MSMg01no377_k12.b1 PHD_FILE: MSMg01no377_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:55 2005
         (347 letters)



>mm_chr18_40467469_40468215
          Length = 747

 Score =  375 bits (194), Expect = e-108
 Identities = 239/256 (93%), Gaps = 6/256 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctg---ttccactgtcctttcaggtccacatttgctctggctctggcaactga 61
           ||||||||||   |  |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 457 gaattctctgaact--cactgtcctttcaggtccacctttgctctggctctggcaactga 400

                                                                       
Query: 62  ctgaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataaca 121
           ||||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||
Sbjct: 399 ctgaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaaca 341

                                                                       
Query: 122 caccctaacagaaagaggaaggctccactcactagtacactttcactagaagcctcgccc 181
           ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 340 cactctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccc 281

                                                                       
Query: 182 tgtcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaattt 241
           || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 280 tgccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaattt 221

                           
Query: 242 ctacttcatgtttaat 257
           ||||||||||||||||
Sbjct: 220 ctacttcatgtttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)