Query= MSMg01no377_n06.b1 MSMg01no377_n06.b1 CHROMAT_FILE:
MSMg01no377_n06.b1 PHD_FILE: MSMg01no377_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:09 2005
(495 letters)
>mm_chr18_48839715_48840609
Length = 895
Score = 754 bits (390), Expect = 0.0
Identities = 467/498 (93%), Gaps = 17/498 (3%)
Strand = Plus / Plus
Query: 4 ggaattctgccacatatactaataaataatataattcttcaactatttctttattttaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgccacatatactaataaataatataattcttcaactatttctttattttaga 263
Query: 64 cccaatatgctccccggctgctttgcttaatgttttcttttgttgctgttggtgttttct 123
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 cccaatatgctccccgactgctttgcttaatgttttcttttgttgcttttggtgttttct 323
Query: 124 agtgaaatttcagcatctaagacattgaaaaacatggcagaaccaaaaacacttcccata 183
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgaaatttcagcatctaagacactgaaaaacatggcagaaccaaaaacacttcccata 383
Query: 184 tttgaaataaaaatttgaaagaaacaaaatgaataaaataaaataaaat--aaaaagttg 241
||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 384 tttgaaataaaaatttgaaagaaacaaaatgaataaaat----t----tttaaaaagttg 435
Query: 242 gta-a-tagggagacggcaatcacctttttctagaaagtaatccaaaccagagtgaaaaa 299
| | ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 436 --acactagggagactacaatcaactttttctagaaagtaatctaaaccagagtgaaaaa 493
Query: 300 ttggaaagaaaaactccccccacaaaatctgggtaaaaa-cacaataacgtccttctc-a 357
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| || |
Sbjct: 494 ttggaaagaaaaactccctccacaaaatctgggtaaaaaacacaataacatcctt-tcca 552
Query: 358 gtagtaaccagttgataggctaaagcaagaggttccccaggagtccaagactggcctgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtagtaaccagttgataggctaaagcaagaggttccccaggagtccaagactggcctgga 612
Query: 418 cgataagaccctatctcaaatgaagtgggaagagattcatctcatagtccccattcctat 477
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct: 613 cgataagaccctatctcaaatgaagtgagaagagattcatttcatagtccctattcctat 672
Query: 478 ttttcctactttacctta 495
|||||||| |||||||||
Sbjct: 673 ttttcctattttacctta 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_n06.g1 MSMg01no377_n06.g1 CHROMAT_FILE:
MSMg01no377_n06.g1 PHD_FILE: MSMg01no377_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:09 2005
(427 letters)
>mm_chr18_49032796_49033622
Length = 827
Score = 810 bits (419), Expect = 0.0
Identities = 425/427 (99%)
Strand = Plus / Minus
Query: 1 tagttttgattttcttaagccaagatctgcaggaggatgagtttacttctaagtcttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tagttttgattttcttaagccaagatctgcaggaggatgagtttacttctaagtcttgtc 568
Query: 61 tctgagttgttgactgagtcacaaaagtatgtatgataggaaaaccatctctagtgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctgagttgttgactgagtcacaaaagtatgtatgataggaaaaccatctctagtgacaa 508
Query: 121 gcactgcagattcaaaggtccacttgtaccattcttgtttaaatgtctgagccaagtgct 180
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 gcactgcagatccaaaggtccacttgtaccattcttgtttaaatgtccgagccaagtgct 448
Query: 181 tgtgctgcctatagactgcatattttgaaaactacctcatgatcttctggaggacattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtgctgcctatagactgcatattttgaaaactacctcatgatcttctggaggacattac 388
Query: 241 acatgaatcaacctaggagttcattggcttcccattttctttccattagcatccatcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acatgaatcaacctaggagttcattggcttcccattttctttccattagcatccatcttt 328
Query: 301 gctaaatatttaatccaggttccttggatttcaggggcaagtgaggccctggtcattaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctaaatatttaatccaggttccttggatttcaggggcaagtgaggccctggtcattaat 268
Query: 361 gttgctgaaactatcaggaagaaagaggctgctgccaaacaaaatatgctaggagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttgctgaaactatcaggaagaaagaggctgctgccaaacaaaatatgctaggagaaaaa 208
Query: 421 acttaca 427
|||||||
Sbjct: 207 acttaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
