BAC Information

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BAC

Clone NameMSMg01-377N24
Chromosome18 (Build37)
Map Location 55,959,491 - 55,959,895
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042489, Zfp608, LOC100043089, LOC667401
Downstream geneLOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377N24.T7 (MSMg01no377_n24.b1)MSMg01-377N24.TJ (MSMg01no377_n24.g1)
ACCAG482854AG482855
length808808
length of high quality
(start - end)
411 (46 - 456)355 (76 - 430)
definitionCHROMAT_FILE: MSMg01no377_n24.b1 PHD_FILE: MSMg01no377_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:13 2005CHROMAT_FILE: MSMg01no377_n24.g1 PHD_FILE: MSMg01no377_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGTAAACTAATCTATTTATGAAGTATGAGCTGGCATAATCCA
GCTACCTCTCAAAAATCCTATCAGTTGACAAAACAAGCCATATCCACAGG
AGCCTTTGTGGGACATTTTTAGATTCAAACCATAGCACATTGAAAGGAAC
TAGAAAATAAGAATCTACATTCAACTCTAGAACAAAGACAGTAAATTATA
AGGTGTTAGAATCAGGGAAATTATTCACATCGGATAGAGACAAAGAAAAC
ATATGCATTGAAATCATCCTGGGATAACTCTTTTTATTCCCTACATATAA
TGTTATATAAGAAACAAGTGAAATCACCATCAATTCTTCTTGGGTGTAAA
TTGCACTTCTTGTTCTTACTTTTATAAAAGGATTTAGCATATATACATGA
ACTTTTAAAAGGCTTCAGGATATGTTAAGCTTTTGTTCTGTTATGAATTT
TGCTAACCCACTCAGTTGGGGCTTTTTTAATTATAGGCTCATGAGCCTCT
TTTGTCTTGAATAANTAACCCATTTTCCCCCCCTTATAATATCCCCCCCT
AACTTAACAAAAATTTTTTCCCCCTAAAATTATAATTTCGGGAAGGCCCG
ACCCAAGGCGCACTTTTTTTTATACTCCCCCCATTCGGAAATCCCCTCGA
CTTTCTTTTATTTATAATCACATTTTGGGGAGTAAAAACTTTCTTGGACG
CTAATGGGACAATTTTTCCCAACATTGTGGGTGTCCCAGAATCCTTTTTC
TCATTTCT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTTTATGTGTATCAA
GGTTATGGCCCTCTTGTTATCTTTTTCAGCTGTATCCATGTCTGGTTTTG
CTAGGAAAGTAATTTTAGCCTTATAGAATATTGTGCACTTTTTTATGTTG
AAGAGAATTTTTCTCTTTTTTAGATTTAAGTCAAAATGGTGTAAGGCGCA
GTATCAATCTGCTATTTCTTTGTCGGTATTCCATCTAGATGGTATTGTCT
ATTACTAAGATTGTGTTACTTAAGCTCCATAATATTATGGTATTAAGAGA
TAATTTTCTTCAGGTCTATTAATGCTTGCTGAGAATGTTTGTACTGTATG
ATTTTATATACATATATATGATAAAGTCACACACACACACACATATATGT
ATATATATATATATGTATACATATATATATATGTATACCTATATATACCT
ATATATATGGGTATATATGCACATATATATACCTATATATATGCATGGAT
TTGGATTTGGGACCCAAATTCCCTACATTTTCCGGTTTTTTCTTTTAACC
CCGTGGCTTCCTTACGTCTAAATAAATTTTTTCTATGAAAATATTCTCAC
GTTCGATTTATTATATGTTTACCTTTTCTTACGTTTTTCTCTTCTCCTCT
GCCCTCATCATTATTATACCAATACTTTTAATTTTTTGTCTTCTTTTTTT
TACTTCCCCATCCCCACTTTTTTTTATTTCGTTACGCTTTGTTCCCCTTA
TTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_n24.b1 MSMg01no377_n24.b1 CHROMAT_FILE:
MSMg01no377_n24.b1 PHD_FILE: MSMg01no377_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:13 2005
         (411 letters)



>mm_chr18_55959287_55960097
          Length = 811

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcagtaaactaatctatttatgaagtatgagctggcataatccagctacctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagtaaactaatctatttatgaagtatgagctggcataatccagctacctct 264

                                                                       
Query: 65  caaaaatcctatcagttgacaaaacaagccatatccacaggagcctttgtgggacatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaaatcctatcagttgacaaaacaagccatatccacaggagcctttgtgggacatttt 324

                                                                       
Query: 125 tagattcaaaccatagcacattgaaaggaactagaaaataagaatctacattcaactcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagattcaaaccatagcacattgaaaggaactagaaaataagaatctacattcaactcta 384

                                                                       
Query: 185 gaacaaagacagtaaattataaggtgttagaatcagggaaattattcacatcggatagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacaaagacagtaaattataaggtgttagaatcagggaaattattcacatcggatagag 444

                                                                       
Query: 245 acaaagaaaacatatgcattgaaatcatcctgggataactctttttattccctacatata 304
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaagaaaatatatgcattgaaattatcctgggataactctttttattccctacatata 504

                                                                       
Query: 305 atgttatataagaaacaagtgaaatcaccatcaattcttcttgggtgtaaattgcacttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttatataagaaacaagtgaaatcaccatcaattcttcttgggtgtaaattgcacttc 564

                                                        
Query: 365 ttgttcttacttttataaaaggatttagcatatatacatgaactt 409
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgttcttacttttataaaaggatttagcatatatacatgaactt 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)