Query= MSMg01no377_p15.b1 MSMg01no377_p15.b1 CHROMAT_FILE:
MSMg01no377_p15.b1 PHD_FILE: MSMg01no377_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
(484 letters)
>mm_chr18_54354883_54355766
Length = 884
Score = 555 bits (287), Expect = e-162
Identities = 300/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 1 atttaagagtctcacaaggcaagaggatactttactgatctcaactgatggagaataaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atttaagagtctcacaaggcaagaggatactttactgatctcaactgatggagaataaca 246
Query: 61 ctcaaaattgcaaacaggtgatgtcaacctgtatccacatc--ttttgttgttgttctta 118
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 245 ctcaaaattgcaaacaggtgatgtcaacctgtatccacatcttttttgttgttgttctta 186
Query: 119 ttagatattttttatttacatttcaaatgttatcccctttcctggtttcctctctgaaaa 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 185 ttagatattttttatttacatttcaaatgttatcccctttcctggtttcccctctgaaaa 126
Query: 179 ccccttatcccctttaccctccccctgcacaccaacccacccactcccacttcctagccc 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 125 ccccttatcccccttaccctccccctgcacaccaacccacccactcccacttcctggccc 66
Query: 239 tggcattcccctacactggggcatagagcctttacaggaccaagggcctctcctcccatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tggcattcccctacactggggcatagagcctttacaggaccaagggcctctcctcccatt 6
Query: 299 aatga 303
|||||
Sbjct: 5 aatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_p15.g1 MSMg01no377_p15.g1 CHROMAT_FILE:
MSMg01no377_p15.g1 PHD_FILE: MSMg01no377_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
(407 letters)
>mm_chr18_54180435_54181241
Length = 807
Score = 725 bits (375), Expect = 0.0
Identities = 399/407 (98%)
Strand = Plus / Plus
Query: 1 cctgggtgttcaacaatggtattgctatagtatatggaagttctgttattagttttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggtgttcaacaatggtattgctatagtatatggaagttctgttattagttttctga 260
Query: 61 ggaaccccgacactgatttccacagtgaccgcactagtttatgtccccactagcagtgac 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ggaaccccgacactgatttccacagtgaccgcactagtttttgtccccactagcagtgac 320
Query: 121 tacaggaattcttgatggttcttcctatctctggggctgctcccataacccacctgtaga 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 321 tacaggaattcttgatggttcttcctatctctagggctgctcccatatcccacctgtaga 380
Query: 181 cagctgtttcaactctatttcctggtgcatgtagcaccatgctgaatgagagattttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctgtttcaactctatttcctggtgcatgtagcaccatgctgaatgagagattttgta 440
Query: 241 ggcgcttcctctctccgtgtgagtgcaggagagcactttttgctttctgtttatcagtgg 300
|| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggcttcctctctctgtgtgagtggaggagagcactttttgctttctgtttatcagtgg 500
Query: 301 aagtctgaactgtttccattcctctccttcacgccacaggcttttggttttccttctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtctgaactgtttccattcctctccttcacgccacaggcttttggttttccttctgaa 560
Query: 361 ctgtgagtcaggaaccttgagcctgaatatttttctttacctttctg 407
||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 561 ctgtgagtcaggaacgttgagcctgaatatttttctttatctttctg 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
