TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCTACCGTTTCTTGTTCCTGGGGTTGCCAAGACATATCAG
GAGTAGAGTACAAATACAATTCCCTTAGTGCTGGAGGCTGGGGCCCTGCC
GTAGCCTCTGGAGTGCAGAGGCCGGAAGAACCCAGTCTCACTGGTCCACA
GAACACATCTTATAACCAGGCAGGGAGTCCCCTCCAGGAGGAGCTAGCTT
ATTTGCATAATGAAAACAGGTAGAATATAAAGTGACATCTGCGCAGATGT
GAACGTCCTTTAAATCAGAGGCCCTGACACGTCTTTATGGTCAAGCAGCT
CAGAGTTTCCAAGTGAGGCAGTCTGGCCATGACACCCAACTTAAACATCT
TGAGTTTGAGTTGTCCCCTTGATAGGTGCTGCACTTATTTCACAACTGAC
CACACCTATCCGCTGTCACCCTCCCGAGTTTCCAAACGTGAAACTCGTTT
TTAATGGAAATCGCCAATTTGCCAAACGTTCTCTGTTAGGCTTTTTTTTT
TTTTTTTTTTTTTGAAATCTACTACAGTCATCTCTTTGGGCTAACATCTT
CTCACTGGTCATGTATTTCTAACCCATTATCCCTCTGTGGAACAAGAATC
CATTTTAAAACCTTCCAGTTCTAATTTGGAACATGAATTGATTGGGCGGC
TTCCACTCAGTGTCAAAGCTTCCCTGATTTTGCCCCTATAACGAA

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATTTAAGGTATCAGC
TACTTTTGTTCCATGTCTTAGTTTGTCTGCACTGGTGTTTGTACAATGCT
TTGGTATTTCCCGATGCAGTCACAGTGAATATAGAACGAGGCTTGCAAGG
GAATCACTTCTCTATATAAAATAAACAGCTCTGTGTGCTTATCCACAAGG
GACTTCGAGGTCCTCTGGAGTGATTGAGCGCCATGCATCTGGGGGCAAAG
GCACCTTTCACAGATGGACAGTCTTTAGTTCTGTTTGGAAAGAGCAATCT
CTAGTTATATGAGGCAAACACAGAGTTACGATTTTTGACCAGGACATGGG
GAGAGTTGTGTTTTCCCACCTCATACTGCTAGAGAGGAATTCCAGGAGAA
CTTTATCAAGAGGGGCCTGTGGCCAGTAGCCAGGAAGTTGGATGTTGGTC
TGCTACATTAGATAAAGGTTATTTTTAATTTCTTGGTGCTCTTAGTCTAT
TCCTAGCTAATACCATATTCACATTTATTTCCACGCTTGGTTATGCAGAA
TCCTGATTATATGTTTGGTTGAACACCCCCCCCTAACATTATGGCTCAAT
GACGCTTTATGCCTCTTTTTTTTTATTTAATTCCCCCCACATACCTCCCC
ACCTTTTCTTTCCTTTTCTCCCAGTTTTCTTTTTCCCCATTTTTTCCCCT
CATTTCCACTCCCATTCTTTCTCTTTCTTC

Query= MSMg01no378_k07.b1 MSMg01no378_k07.b1 CHROMAT_FILE:
MSMg01no378_k07.b1 PHD_FILE: MSMg01no378_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:11 2005
         (522 letters)



>mm_chr18_44677342_44678263
          Length = 922

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctaccgtttcttgttcctggggttgccaagacatatcaggagtagagtacaa 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctaccgtgtgttgttcctggggttgccaagacatatcaggagtagagtacaa 264

                                                                       
Query: 65  atacaattcccttagtgctggaggctggggccctgccgtagcctctggagtgcagaggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacaattcccttagtgctggaggctggggccctgccgtagcctctggagtgcagaggcc 324

                                                                       
Query: 125 ggaagaacccagtctcactggtccacagaacacatcttataaccaggcagggagtcccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaagaacccagtctcactggtccacagaacacatcttataaccaggcagggagtcccct 384

                                                                       
Query: 185 ccaggaggagctagcttatttgcataatgaaaacaggtagaatataaagtgacatctgcg 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaggaggagctagctcatttgcataatgaaaacaggtagaatataaagtgacatctgcg 444

                                                                       
Query: 245 cagatgtgaacgtcctttaaatcagaggccctgacacgtctttatggtcaagcagctcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagatgtgaacgtcctttaaatcagaggccctgacacgtctttatggtcaagcagctcag 504

                                                                       
Query: 305 agtttccaagtgaggcagtctggccatgacacccaacttaaacatcttgagtttgagttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttccaagtgaggcagtctggccatgacacccaacttaaacatcttgagtttgagttg 564

                                                                       
Query: 365 tccccttgataggtgctgcacttatttcacaactgaccacacctatccgctgtcaccctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccccttgataggtgctgcacttatttcacaactgaccacacctatccgctgtcaccctc 624

                                                                       
Query: 425 ccgagtttccaaacgtgaaactcgtttttaatggaaatcgccaatttgccaaacgttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgagtttccaaacgtgaaactcgtttttaatggaaatcgccaatttgccaaacgttctc 684

                                         
Query: 485 tgttaggctttttttttttttttttttttt 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 tgttaggctttttttttttttttttttttt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_k07.g1 MSMg01no378_k07.g1 CHROMAT_FILE:
MSMg01no378_k07.g1 PHD_FILE: MSMg01no378_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:11 2005
         (394 letters)



>mm_chr18_44810725_44811518
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatatatttaaggtatcagctacttttgttccatgtcttagtttgtctgcactggtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 594 tttatatatttaaggtatcagctacttttgttccatgtcttagtttgtctgcactggtct 535

                                                                       
Query: 61  ttgtacaatgctttggtatttcccgatgcagtcacagtgaatatagaacgaggcttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttgtacaatgctttggtatttcccgatgcagtcacagtgaatatagaacgaggcttgcaa 475

                                                                       
Query: 121 gggaatcacttctctatataaaataaacagctctgtgtgcttatccacaagggacttcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gggaatcacttctctatataaaataaacagctctgtgtgcttatccacaagggacttcga 415

                                                                       
Query: 181 ggtcctctggagtgattgagcgccatgcatctgggggcaaaggcacctttcacagatgga 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 414 ggtcctctggagtgattgagcgccatgcatctgggggcaaaggtacctttcacagatgga 355

                                                                       
Query: 241 cagtctttagttctgtttggaaagagcaatctctagttatatgaggcaaacacagagtta 300
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagtcagcagttctgtttggaaagagcaatctctagttatatgaggcaaacacagagtta 295

                                                                       
Query: 301 cgatttttgaccaggacatggggagagttgtgttttcccacctcatactgctagagagga 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgatttctgaccaggacatggggagagttgtgttttcccacctcatactgctagagagga 235

                                             
Query: 361 attccaggagaactttatcaagaggggcctgtgg 394
           ||||||||||||||||| ||||||||||||||||
Sbjct: 234 attccaggagaactttagcaagaggggcctgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)