XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTCCTAATTGTATTAATGAAGGAGGCAATTCAGGGCAATTCAT
CAGAATGTGAGCACATATTTATAGTTTTCCAATTTATAACCCTAAGAAAG
ATAAAGTAGAAGCATTCTGTCTTCCGAATAAGCAATGCTATCAACAGAGG
TTAACCACCTTCCTGAGTCACATAATTCAAACTTAAAGTCTCCACCGCCC
TTCACTTTGCCATGTGAATTATCAGCTGGAAAGATGCTCAGTGTTTGTCT
TAGCAGTCTATTGTGATTATGAGTGATTTGTGGTCCAAAATGGAAATGAT
ACCACGCGCTGTTGTCTTCATGACTTCAGGGGAAAAGCAATTTTCTAGAT
CACTAATCCAGAGACAGATTTTGCCTCTGAATCTTGAAGCCTCCCTTGTT
CCACTGATATTTTGCATGGAAGTCTCAGATCCTTCGGCAATCCAGATTTA
CTATCTGACTTGTTTAATGTCTACTAATGATTATAATATAATTTTGACAC
TTGCATTTATTTGTTCCCAATGCTCTCATTTCTAATTTCCCTAGAAAAAA
AATGTTTGGAATTCTGGTCCCTAATGTGTAAGAGATGCTACAGCTAGCTC
TCCTCAGGGATGTCAAGAGCTTTCCTGATTCCCCGGCTGCTATTGCTCAC
ATTTAATTGGGGCTTTCAGGGCAGACCCATTTTCTTTTGAAAACAAAAGA
AN

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTACACTGGGGGATTGAGCCTTCACAAG
ACCAAGAGACTCTCCTCTCATTGATGTTCCACAAGTCTATCCTCTGCTAC
ATATGCAGCTGGAGCCATGGGTTCCTTCATGTGCACTCTTTGGTTGGTTT
GGTTTGGTTTGGTTGGTTTAGTCCCTGGAGTTCTGGGGTTACTGGTTAGT
TCATATTGTTGTTCCTCCTATGGGGCTGCAAACTCCTTCAGCTCTTGGGT
TCTTTCTCCAGGTCCTCCATTAGGGACCCTGTGCTCAGTCCAATGGATGT
TTGTGGTCATCCACTTCTGTACTTGTCAGGTACTGGCAAAGCCTCTCAGG
AGACAGCTATATCAGCCTCCTGTCAACAAGCACTTGTTGGCATCCAAAAT
AGCGCCTGGCTTAGCTAAATGATTTTGTCCATGTACTTTATTTATGTAAA
AAATTCCTGGAATCCCTTGTTACCCATTTTAACAAACCTTACAATATATA
CCTTGTTACATCCTCACCACATTTTCATCTCTCAATTTTTTTGCCACGCC
CCACCCAATATCCCAAATTTCTTTACTAATTGCTTTTATTTCACCCCATT
TTCATACCCTTCTACTTTATTCCTTACAAAATACAACCTCTTCCGTCATT
TAATTTTTGCCACATATCTAGTATTTCATTAATGTTTTTATACCCTCTAT
TTCCCTTTTTATCAATAACTTCCCTT

Query= MSMg01no379_b12.b1 MSMg01no379_b12.b1 CHROMAT_FILE:
MSMg01no379_b12.b1 PHD_FILE: MSMg01no379_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:45 2005
         (563 letters)



>mm_chr18_41043593_41044558
          Length = 966

 Score = 1050 bits (543), Expect = 0.0
 Identities = 559/565 (98%), Gaps = 3/565 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtattaatgaaggaggcaattcagggcaattcatcagaatgtgagcacatatttatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttgtattaatgaaggaggcaattcagggcaattcatcagaatgtgagcacatatttatag 706

                                                                       
Query: 61  ttttccaatttataaccctaagaaagataaagtagaagcattctgtcttccgaataagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttttccaatttataaccctaagaaagataaagtagaagcattctgtcttccgaataagca 646

                                                                       
Query: 121 atgctatcaacagaggttaaccaccttcctgagtcacataattcaaacttaaagtctcca 180
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 645 atgatatcaacagaggttaaccaccttcctgtgtcacataattcaaacttaaagtctcca 586

                                                                       
Query: 181 ccgcccttcactttgccatgtgaattatcagctggaaagatgctcagtgtttgtcttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccgcccttcactttgccatgtgaattatcagctggaaagatgctcagtgtttgtcttagc 526

                                                                       
Query: 241 agtctattgtgattatgagtgatttgtggtccaaaatggaaatgataccacgcgctgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agtctattgtgattatgagtgatttgtggtccaaaatggaaatgataccacgcgctgttg 466

                                                                       
Query: 301 tcttcatgacttcaggggaaaagcaattttctagatcactaatccagagacaga-ttttg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 465 tcttcatgacttcaggggaaaagcaattttctagatcactaatccagagacagatttttg 406

                                                                       
Query: 360 cctctgaatcttgaagcctcccttgttccactgatattttgcatggaagtctcagatcct 419
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctctgaatcttgaagcttcccttgttccactgatattttgcatggaagtctcagatcct 346

                                                                       
Query: 420 tcggcaatccagatttactatctgacttgtttaatgtctactaatgattataatataatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcggcaatccagatttactatctgacttgtttaatgtctactaatgattataatataatt 286

                                                                       
Query: 480 ttgacacttgcatttatttgttcccaatgctctcatttctaatttccctag--aaaaaaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 285 ttgacacttgcatttatttgttcccaatgctctcatttctaatttccctagaaaaaaaaa 226

                                    
Query: 538 atgtttggaattctggtccctaatg 562
           |||||||||||||||||||||||||
Sbjct: 225 atgtttggaattctggtccctaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 966
Length adjustment: 10
Effective length of query: 553
Effective length of database: 956
Effective search space:   528668
Effective search space used:   528668
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)