BAC Information

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BAC

Clone NameMSMg01-379L10
Chromosome18 (Build37)
Map Location 41,067,319 - 41,221,467
singlet/doubletdoublet
Overlap genenone
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379L10.T7 (MSMg01no379_l10.b1)MSMg01-379L10.TJ (MSMg01no379_l10.g1)
ACCAG484260AG484261
length744739
length of high quality
(start - end)		555 (44 - 598)519 (73 - 591)
definitionCHROMAT_FILE: MSMg01no379_l10.b1 PHD_FILE: MSMg01no379_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:33 2005CHROMAT_FILE: MSMg01no379_l10.g1 PHD_FILE: MSMg01no379_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,220,936 - 41,221,467)(41,067,319 - 41,067,837)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTATCCGACAGATATAGTCTCCTCCGGTTTCCTGCTGTGCTAA
TCTCACAAGAAAATAAGCATCATCTCTGATCACATTTCTGGAAAAGGAGA
CATAAGGAGACTCTTCTAAATCTGATTCTTTTTCAGGAAAGTTCCTGCTG
TGCTAGGCTCAGTCTAACCACCTTTATATTTTTCCTTCTTATACAGTTTT
TATGTCTTCTTCATTCTAAAGTTAAGTGGAATAACCTCTCTACAACCTAT
ATTTTATGTATTCTTCTTACTTTGAGTTGTAGCTAACTGTCCCTTCAGCA
GCAATATCAGGTTCCTTATTAAAATCAGTCACTATACACTATTCATTTGG
TTCATTGATCATATCACATTCTAGGATTGCTTTCATACACACAGATTTAG
TTAGTTAGTATCTTGTACATTATGTACTTTTGTCAGGAGCAAGCACTTCT
GTGTATCTGATTATTGTTTCATCCCCAATAACTAGTGCAATTAACAGAGC
TGGTTAAGTTTTGTCAATTTGATGTAAGGTAGAGTCATCTGGAAAGAGGT
ACCTCAGTTGGAGATTAGTCTCCATCAGGTTGGCATGTGGACAGACTGCT
CTATGGGAAAATTTTGTGTGATGATTGATGTTGAAAGGNCCAGCCCCCGG
TTGGTGGTACCAGCCAAGGAGTTTTGATTGTACATAAAAGAAAC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTACAGTATTTTGAGTGAAAATTATT
TACTGCTAAAGAGAAATTCATAACGCAGATGTGAAAGGGAAGAAGGAAGC
TGGGGTAGTTGTATTACTTTATTCTGAATGATTCTTGCATGAATGATCCA
TTTTGTGACTACATTGTAATCTGTACATTTGTAAGTGTTAAACATTTATG
AATATAGTATATTTTAAGACCATGTTTGATTTAACATGAGGCAGTATTCA
AAACTAAACATATGATTTCAAATTTTGAGGTTCCTTACTTTATTTTTAAA
TAGTATGAGTAAGGGATTCTATCCAATTGAGGTGGGTTAGATAAAACAGT
TTTTATCCATTTTTAAGAGCTACATATATGACTTGCTTCATATTTTCTGA
GTGCAAAGGGTTCTTTTCTATTTGTTTAACACCATGACATAATTTTTATA
ATGACATTTAAAATAGATTTCTCTTTGAATTTGGGGTTCTTTGAGCTACA
TTTGGAATAAGGTGGGAATAGGCTACATTCCCATTCTAATAGAAATGGGA
ACAAGATAATTAGTAATATCACCAAAGGGCTAAATTCCAATGCCCACAGA
GTTTTTCATGCAAAATTTTAATGCTTCGGGCATTCTGTTACCGGTGAATG
ACACAGATATTCCCGTATTTTGATTCCCAGTACCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_l10.b1 MSMg01no379_l10.b1 CHROMAT_FILE:
MSMg01no379_l10.b1 PHD_FILE: MSMg01no379_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:33 2005
         (555 letters)



>mm_chr18_41220763_41221717
          Length = 955

 Score = 1006 bits (520), Expect = 0.0
 Identities = 529/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  gacagatatagtctcctccggtttcctgctgtgctaatctcacaagaaaataagcatcat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gacagatatagtctcctccggtttcctgctgtgctaatctcacaagaaaataagcatcat 646

                                                                       
Query: 81  ctctgatcacatttctggaaaaggagacataaggagactcttctaaatctgattcttttt 140
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 645 ctctgatcacatttctggaaaaggagacataaggagactcttataaatctgattcttttt 586

                                                                       
Query: 141 caggaaagttcctgctgtgctaggctcagtctaaccacctttatatttttccttcttata 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 caggaaagttcctgctgtgctaggctcagtctaaccacctttatatttttccttcttata 526

                                                                       
Query: 201 cagtttttatgtcttcttcattctaaagttaagtggaataacctctctacaacctatatt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cagtttttatgtcttcttcattctaaagttaagtggaataacctctctacaacctatatt 466

                                                                       
Query: 261 ttatgtattcttcttactttgagttgtagctaactgtcccttcagcagcaatatcaggtt 320
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttatgtattcttcacactttgagttgtagctaactgtcccttcagcagcaatatcaggtt 406

                                                                       
Query: 321 ccttattaaaatcagtcactatacactattcatttggttcattgatcatatcacattcta 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccttattaaaatcagtcactatacactattcatttggttcattgatcatatcacattcta 346

                                                                       
Query: 381 ggattgctttcatacacacagatttagttagttagtatcttgtacattatgtacttttgt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggattgctttcatacacacagatttagttagttagtatcttgtacattatgtacttttgt 286

                                                                       
Query: 441 caggagcaagcacttctgtgtatctgattattgtttcatccccaataactagtgcaatta 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 caggagcaagcacttctgtgtatctgattattgtttcatccccaataactagtgcaatta 226

                                                               
Query: 501 acagagctggttaagttttgtcaatttgatgtaaggtagagtcatctggaaa 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acagagctggttaagttttgtcaatttgatgtaaggtagagtcatctggaaa 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_l10.g1 MSMg01no379_l10.g1 CHROMAT_FILE:
MSMg01no379_l10.g1 PHD_FILE: MSMg01no379_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:33 2005
         (519 letters)



>mm_chr18_41067119_41068037
          Length = 919

 Score =  949 bits (491), Expect = 0.0
 Identities = 512/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttacagtattttgagtgaaaattatttactgctaaagagaaattcataacgcagatgt 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 201 atttacagtattttgagtgaaaattatttactgctaaagagaatttcataacgcagatat 260

                                                                       
Query: 61  gaaagggaagaaggaagctggggtagttgtattactttattctgaatgattcttgcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagggaagaaggaagctggggtagttgtattactttattctgaatgattcttgcatga 320

                                                                       
Query: 121 atgatccattttgtgactacattgtaatctgtacatttgtaagtgttaaacatttatgaa 180
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 321 atgatccattttgtgactacattgtaatctgtatatttgtaattgttaaacatttatgaa 380

                                                                       
Query: 181 tatagtatattttaagaccatgtttgatttaacatgaggcagtattcaaaactaaacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagtatattttaagaccatgtttgatttaacatgaggcagtattcaaaactaaacata 440

                                                                       
Query: 241 tgatttcaaattttgaggttccttactttatttttaaatagtatgagtaagggattctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatttcaaattttgaggttccttactttatttttaaatagtatgagtaagggattctat 500

                                                                       
Query: 301 ccaattgaggtgggttagataaaacagtttttatccatttttaagagctacatatatgac 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaattgaggtgggttaggtaaaacagtttttatccatttttaagagctacatatatgac 560

                                                                       
Query: 361 ttgcttcatattttctgagtgcaaagggttcttttctatttgtttaacaccatgacataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ttgcttcatattttctgagtgcaaagggttcttttctatttgtttaaaaccatgacataa 620

                                                                       
Query: 421 tttttataatgacatttaaaatagatttctctttgaatttggggttctttgagctacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttataatgacatttaaaatagatttctctttgaatttggggttctttgagctacatt 680

                                                  
Query: 481 tggaataaggtgggaataggctacattcccattctaata 519
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaataaggtgggaataggctacattcccattctaata 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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