Query= MSMg01no380_d10.b1 MSMg01no380_d10.b1 CHROMAT_FILE:
MSMg01no380_d10.b1 PHD_FILE: MSMg01no380_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:13 2005
(575 letters)
>mm_chr18_50399732_50400706
Length = 975
Score = 406 bits (210), Expect = e-117
Identities = 267/308 (86%), Gaps = 36/308 (11%)
Strand = Plus / Minus
Query: 4 ggaattcctaacttgcctaaatgctggagggaagcaaggtctttggcactgttccaacaa 63
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 405 ggaattcctaacttgtctaaatgctggagggaagcaaggtctgtggcactgttccaacaa 346
Query: 64 tactgctaataaagtatatcaaccgaaagatggtaagctagcttgaaataagttgagtag 123
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tactgctaataaagtataccagccgaaagatggtaagctagcttgaaataagttgagtag 286
Query: 124 gaaacaattccaaaataatctaattaataaaaatcattagaaaaaatgtacctttatcta 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 gaaacaattccaaaataatctaattaataaaactcattagaaaaaatgtacctttatcta 226
Query: 184 aaatgaatataagaaagact-------------tta-ct--------------------- 208
|||||||||||||||||||| ||| ||
Sbjct: 225 aaatgaatataagaaagacttttgttatgcatattatctatgaaagttgaaaatattcac 166
Query: 209 -ttactttctatataaatacattttcttcaaagaaggcttgtcaatggcaaatctctgaa 267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 attactttctatataaatacattttcttcaaagaaggcttgtcaatggcaaatctctgaa 106
Query: 268 ggtctggt 275
||||||||
Sbjct: 105 ggtctggt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_d10.g1 MSMg01no380_d10.g1 CHROMAT_FILE:
MSMg01no380_d10.g1 PHD_FILE: MSMg01no380_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:13 2005
(535 letters)
>mm_chr18_50266422_50267356
Length = 935
Score = 1011 bits (523), Expect = 0.0
Identities = 532/535 (99%)
Strand = Plus / Plus
Query: 1 ctgacaaccctggagtccacgtagaagaaacagcagaaccggagctatgtccacaaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctgacaaccctggagtccacgtagaagaaacagcagaaccggagctacgtccacaaagtt 260
Query: 61 gtcttctgatgggcatgccctctgtggcaggcacactgagacttacattcacatacactc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttctgacgggcatgccctctgtggcaggcacactgagacttacattcacatacactc 320
Query: 121 acgcacacaaatccacacacgcttgcttacacaatagtaatgaagttaaagttgataaaa 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcacacgaatccacacacgcttgcttacacaatagtaatgaagttaaagttgataaaa 380
Query: 181 taaacaaaaaacagttgggcatatgaccttcttctggccagtcagaacattccgtgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacaaaaaacagttgggcatatgaccttcttctggccagtcagaacattccgtgcctg 440
Query: 241 tccaataatgataggttcaggactaaatacataatacagtgatgtaatcaacactgattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaataatgataggttcaggactaaatacataatacagtgatgtaatcaacactgattt 500
Query: 301 ggctgtagggattggaggtgcagtaccctgggtcgacacaaacgagaatgcacaagtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctgtagggattggaggtgcagtaccctgggtcgacacaaacgagaatgcacaagtgcc 560
Query: 361 tacatttgaaatacttccctagtgcacagggtcctgggttcaattccacaataagccata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatttgaaatacttccctagtgcacagggtcctgggttcaattccacaataagccata 620
Query: 421 gatcttcctagtactttttatttatttactttttactggtattgggcactgaattcaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcttcctagtactttttatttatttactttttactggtattgggcactgaattcaatg 680
Query: 481 tcttgagagcactgtgggcgagttgtagcttcttctctttttcacttttgagaca 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttgagagcactgtgggcgagttgtagcttcttctctttttcacttttgagaca 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
