Query= MSMg01no380_k12.b1 MSMg01no380_k12.b1 CHROMAT_FILE:
MSMg01no380_k12.b1 PHD_FILE: MSMg01no380_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:47 2005
(337 letters)
>mm_chr18_7260501_7261237
Length = 737
Score = 621 bits (321), Expect = 0.0
Identities = 333/337 (98%)
Strand = Plus / Plus
Query: 1 ggtgtctgaaaattagctctgttatggtgctgtggagctcttccagcttctgttctcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtctgaaaattagctctgttatggtgctgtggagctcttccagcttctgttctcttt 260
Query: 61 ttattaatttctcattgacttttactgagtgatcaaatttctctactgtgcctttcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattaatttctcattgacttttactgagtgatcaaatttctctactgtgcctttcagca 320
Query: 121 tgaatctctgtttcctatgtgacctactgtcctgaggttttctactaaaatttgtattat 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgaatctctgtttcctatgtgacctactgtcctgaggttttctactaaagtttgtattag 380
Query: 181 gcttatacttttcatttccaacatcatttcagtctcatttttgtttcacaatctcttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttatacttttcatttccaacatcatttcagtctcatttttgtttcacaatctcttgat 440
Query: 241 taaacttttttttcatactttggattgattttcttatctttttcacctcattgtttatgc 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaactctattttcatactttggattgattttcttatctttttcacctcattgtttatgc 500
Query: 301 tctctattaatacatgtatgtagtctttgagctgttt 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctattaatacatgtatgtagtctttgagctgttt 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_k12.g1 MSMg01no380_k12.g1 CHROMAT_FILE:
MSMg01no380_k12.g1 PHD_FILE: MSMg01no380_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:48 2005
(492 letters)
>mm_chr18_7455415_7456306
Length = 892
Score = 828 bits (428), Expect = 0.0
Identities = 486/528 (92%), Gaps = 36/528 (6%)
Strand = Plus / Minus
Query: 1 caaataaattcaaggtatatataataaaccacaaaaatattagtggggttagaggtgtag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 caaataaattcaaggaatatataataaaccacaaaaatattagtggggttagaggtgtag 709
Query: 61 tttagtagaagagtatttgtctactgtctttgtggcctgggagttgatacctaaaaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttagtagaagagtatttgtctactgtctttgtggcctgggagttgatacctaaaaacac 649
Query: 121 atacacacacaaacacacatacaaaccaaacacacacaccccagcagtttttaaaatgtg 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 648 atacacacacaaacacacatacaaaccacacacacacaccccagcagtttttaaaacgtg 589
Query: 181 gtgaatacattgtgcaaatggcctagatatttattcttagtaagatagaagtattgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 588 gtgaatacattgtgcaaatggcctagatatttattcttagtaagatagaagtattgtcaa 529
Query: 241 ttgcttatatctgtctctaagcactgtgcttatagcgtggggaattttaagtaacttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttgcttatatctgtctctaagcactgtgcttatagcgtggggaattttaagtaacttgaa 469
Query: 301 gtcaatgaaaactattcagtgttggaaatttttattcttttgtggtacttttgtaagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtcaatgaaaactattcagtgttggaaatttttattcttttgtggtacttttgtaagtct 409
Query: 361 tctttttgtgtgcatttgcacatgtgtgcatgcccgcgcgcgcctgcacgtgtgcatgtg 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 408 tctttttgtgtgcatttgcacatgtgtgcatccccgcgcgcgcctgcacgtgtgcgtgtg 349
Query: 421 tgtgtgtgt----------------------------------tgtgtgtgcgttttgtg 446
||||||||| |||||||||||||||||
Sbjct: 348 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgcgttttgtg 289
Query: 447 tgtgtgtgtg--cacttgtatgttcatgtgtataaaggttagaataat 492
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgtgtgtgtgtgcacttgtatgttcatgtgtataaaggttagaataat 241
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
