BAC Information

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BAC

Clone NameMSMg01-381A18
Chromosome18 (Build37)
Map Location 14,352,797 - 14,353,263
singlet/doubletsinglet
Overlap geneLOC100040103
Upstream geneLOC665379, LOC100040358, Zfp521, LOC100040094
Downstream geneLOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381A18.T7 (MSMg01no381_a18.b1)MSMg01-381A18.TJ (MSMg01no381_a18.g1)
ACCAG485279AG485280
length739746
length of high quality
(start - end)		471 (37 - 507)458 (78 - 535)
definitionCHROMAT_FILE: MSMg01no381_a18.b1 PHD_FILE: MSMg01no381_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:19 2005CHROMAT_FILE: MSMg01no381_a18.g1 PHD_FILE: MSMg01no381_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
GTATTCTACTTTCCTCCTGATGACTTATAAGGTTTAATACAGGAAATATT
AAGTTTAAACAAAGAAGGCCCAGAAGGGATACTTGTGTAGACTATCAGAG
ATATTTTTCATTCGTAGGTGGAAGCGTCTAGTTAGCTAAGCAAACTTGGG
TTTTGTTTGAGGCCACCTTACAGATTTTCCTGGCCATCCCTGAGGGAGCG
AATCCAAATTGCCCATGATCCTTCTCTCCTGCTCAGTGGTGTGAGGAGTG
TCAGTGATGAGGCCAAGAAAGTTAGCAAGAGTCACTTCTGGCTTTCTTCC
ACAGGGAAAGCAGCCATTCTAAAGGTGCAGGCCAGTAGGGAAACAACATA
TCTGGCTTGCTAGGAGAGGTCCAGGGACTGCAAATGGGCTGACTCTGAAA
CCTGACTGGCCATCAGATTTGCTACAGATGTATTTCCTAACACATCAGCA
GCCCGTGAAAACCTTCCTGTCTTTTAGAAGGGAGCATTGGTAGCAAGAAA
ATGATGCCTATATAAATCAACCCCCGTGGGCCCAGCACGGCCGTGGGGAG
AATGAGGAATCCATGCATCTTAATGCCCCCCTTTTGGTTGGGAAAGGCAA
TGAAAACCGCCCCCTTTCCTTTTTCCAAAAAGAATTTCTTTTTTTTCCAG
CCACATAAAACGTGGGAGCCAGCTTTTCCACTCTCAAGG

NCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGTCTTCATGCTTGTGCAGCAA
ACAGTTTGCCATTGTGATATTCCCTACTTATCTCTATGTGTGTGCAAGTC
ACTGTGCACTCAGAGTCCAGAAGAAGACATCAGATCCTCTGAAGTTACAG
GCTGTTGCAGGATATCTGCCTTGCCATATGAGGGCTGGTATCTGAACTCT
GGTCTGTAAAAGTTGCTTTTATATGTCATCTGTAATTATCATCTCAAAGC
CTTTCTGCTGAATAAGCTCACCATTTCTACTTCTTTCTGAACTCTCTCTG
GCTGATTCAACTCAGCTGTCCTGGCCCAAACTCCTCTACAAACTGACTAA
TTCAAATCGGCTTTTCTTCGCTTCTGACTGAATTGCTCTGCCAGGCCTCA
AACAAATTCTGGCAATATGTTCTAATACAATGGCTCCTTTTCATTTTCTG
GCTCATTCTCTCTTCACCTTTGTCTAGCTTGTTCTCTTTGCAAGTTTTCT
CTAGAAAACTGTCCTAGTAAGGGGATAATCTCAGAGAACTGTTAAAGTGC
TTCAGGACCCTTTCAGATTAATGCCTTCCCTGAGTTCTCCCGAAGAAGGA
CCACCAGATGTGCTTCGGCGCCCAAAATTGATTCTGTTGCCCGTGGTTAA
TTCCCCAATACACAGGGAAAAAAAATGGTTTCCCTTTGGTAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_a18.b1 MSMg01no381_a18.b1 CHROMAT_FILE:
MSMg01no381_a18.b1 PHD_FILE: MSMg01no381_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:19 2005
         (471 letters)



>mm_chr18_14352593_14353463
          Length = 871

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagtattctactttcctcctgatgacttataaggtttaatacaggaaatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagtattctactttcctcctgatgacttataaggtttaatacaggaaatatt 264

                                                                       
Query: 65  aagtttaaacaaagaaggcccagaagggatacttgtgtagactatcagagatatttttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtttaaacaaagaaggcccagaagggatacttgtgtagactatcagagatatttttca 324

                                                                       
Query: 125 ttcgtaggtggaagcgtctagttagctaagcaaacttgggttttgtttgaggccacctta 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcgtaggtggaagcgtgtagttagctaagcaaacttgggttttgtttgaggccacctta 384

                                                                       
Query: 185 cagattttcctggccatccctgagggagcgaatccaaattgcccatgatccttctctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagattttcctggccatccctgagggagcgaatccaaattgcccatgatccttctctcct 444

                                                                       
Query: 245 gctcagtggtgtgaggagtgtcagtgatgaggccaagaaagttagcaagagtcacttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcagtggtgtgaggagtgtcagtgatgaggccaagaaagttagcaagagtcacttctg 504

                                                                       
Query: 305 gctttcttccacagggaaagcagccattctaaaggtgcaggccagtagggaaacaacata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctttcttccacagggaaagcagccattctaaaggtgcaggccagtagggaaacaacata 564

                                                                       
Query: 365 tctggcttgctaggagaggtccagggactgcaaatgggctgactctgaaacctgactggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctggcttgctaggagaggtccagggactgcaaatgggctgactctgaaacctgactggc 624

                                                          
Query: 425 catcagatttgctacagatgtatttcctaacacatcagcagcccgtg 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catcagatttgctacagatgtatttcctaacacatcagcagcccgtg 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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