Query= MSMg01no381_i02.b1 MSMg01no381_i02.b1 CHROMAT_FILE:
MSMg01no381_i02.b1 PHD_FILE: MSMg01no381_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:56 2005
(620 letters)
>mm_chr18_41333243_41334264
Length = 1022
Score = 1081 bits (559), Expect = 0.0
Identities = 602/617 (97%), Gaps = 4/617 (0%)
Strand = Plus / Plus
Query: 7 gaattctccatgttgctccttgagtaaatacagggtgataatttgaaacaggataagaaa 66
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctccatggggatccttgagtaaatacagggtgataatttgaaacaggataagaaa 266
Query: 67 cgtttgcatttaaatatcctttttt--ctgatcaaatagacaattagttattctttcctt 124
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 cgttttcatttaaatatccttttttttctgatcaaatagacaattagttattctttcctt 326
Query: 125 tg-gaaatgttcctaatttcccaaaaccctctaaaatgaaactgatgggaaacacagcta 183
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgagaa-tgttcctaatttcccaaaaccctctaaaatgaaactgatgggaaacacagcta 385
Query: 184 gtcctcaatatcttacaaatcaatgaattgatcatattgatttttcgtatacaagaggaa 243
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 386 gtcctcaatatcttacaaatcaatgaattgatcatattaattttttgtatacaagaggaa 445
Query: 244 aatttgtgccattgttgttggggtcataattacttagaagaaaaacccaagagtgctccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatttgtgccattgttgttggggtcataattacttagaagaaaaacccaagagtgctccc 505
Query: 304 tacatacactctcatcctatgatacagaatcaaaaaaaccaaaagatgagttacagatat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tacatacactctcatcctatgatacagaatcaaaaaaaccaaaagatgagttacagatat 565
Query: 364 gatagaataacttagaagtactaagccaaatagaaaagagatagatgacatatttcctgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gatagaataacttagaagtactaagccaaatagaaaagagatagatgacatatttcctgt 625
Query: 424 ataataagaatgtttaattttcttctggtttcacaggattgataagatataagttgtctc 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ataataagaatgtttcattttcttctggtttcacaggattgataagatataagttgtctc 685
Query: 484 tactagtccaacctccaatcatttctcccctgtttgtgtgccactcccaaagcaacaaat 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 686 tactagtccaacctccaatcatttctcccctgtttgtgtgccactcccaaagcagcaaat 745
Query: 544 acgaatctgccaaagttttcatatttattatttcttttctttcctacaaagttctaaatc 603
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 746 atgaatctgccaaagttttcatatttattgtttcttttctttcctacaaagttctaaatt 805
Query: 604 ccttactactaagagtg 620
|||||||||||||||||
Sbjct: 806 ccttactactaagagtg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_i02.g1 MSMg01no381_i02.g1 CHROMAT_FILE:
MSMg01no381_i02.g1 PHD_FILE: MSMg01no381_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:56 2005
(564 letters)
>mm_chr18_41472868_41473825
Length = 958
Score = 824 bits (426), Expect = 0.0
Identities = 443/452 (98%), Gaps = 6/452 (1%)
Strand = Plus / Minus
Query: 113 tcagacatgtatttactggcactatacaaacctttcaatggatataagttgggttggtct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tcagacatgtatttactggcactatacaaacctttcaatggatataagttgggttggtct 899
Query: 173 tttgggtgcaacttctttaaataccttgaacctgattctccgacttctgctgcaattgaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tttgggtgcaacttctttaaataccttgaacctgattctccgacttctgctgcaattgaa 839
Query: 233 ttcctgaccacagatttaatgagctaatgttttgtattaattcactaagtttggggaatt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttcctgaccacagatttaatgagctaatgttttgtattaattcactaagtttggggaatt 779
Query: 293 ttctaatcaagggacaactactggccctctttggtaaaccttttaaaaagactatttcaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttctaatcaagggacaactactggccctctttggtaaaccttttaaaaagactatttcaa 719
Query: 353 attgatatatatatatatatataccaaaacatacttatgccaaaaaaattaaagaagtta 412
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 attg------atatatatatataccaaaacatacttatgccaaaaaaattaaagaagtta 665
Query: 413 ccaaaattggaaagtatgtgccttcttgttgtcacttacatatttgagttaatgttcttt 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 664 ccaaaattggaaagtatgtgccttcttgttgtcacttacatattcgagttaatgttcttt 605
Query: 473 agaatttatagaagatgggtgattaacattgaactgacttaggtcctaaattgattgaga 532
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaatttatagaagatggctgattaacattgaactgacttaggtcctaaattgattgaga 545
Query: 533 agtgagtctggaagagtccggttttgagtagt 564
|||||||||||||||| |||||||||||||||
Sbjct: 544 agtgagtctggaagagcccggttttgagtagt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 958
Length adjustment: 10
Effective length of query: 554
Effective length of database: 948
Effective search space: 525192
Effective search space used: 525192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
