Query= MSMg01no382_o10.b1 MSMg01no382_o10.b1 CHROMAT_FILE:
MSMg01no382_o10.b1 PHD_FILE: MSMg01no382_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:46 2005
(661 letters)
>mm_chr18_42933210_42934269
Length = 1060
Score = 924 bits (478), Expect = 0.0
Identities = 520/534 (97%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttccttctaccgtcaagggctcttcctttaagactggccatttcctctgttg 63
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggaattccttccttcaattgtcaagggctcttcctttaagactggccatttcctctgttg 474
Query: 64 actttaaaagctcctcacttacctcccatgctcccactctgaagggtctcacatctgctc 123
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 473 actttaaaagctcctcacttacctcccacactcccactctgaagggtctcacatctgctc 414
Query: 124 acaatgttcttctttaaagaccaagtagctgacaaatcatctccaaagtacttttctctt 183
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 413 acaatgttcttctttaaagaccaaggagctgccaaatcatctccaaagtacttttctctt 354
Query: 184 ataaatatcattaggtgcattttatgtttctgtgacaaatgtctgaaaggaacaaggaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataaatatcattaggtgcattttatgtttctgtgacaaatgtctgaaaggaacaaggaaa 294
Query: 244 atggagggaaaacttattctagcttgtagcttctatgtgtttcaatatatggttagctgg 303
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct: 293 atggagggaaaacttattctagctcgtagcttcaatg-gtttcaatatatggttagctgg 235
Query: 304 ttccattctttctggacctcatgtggcaaagcatcatggcagaaggcatggtgaaatatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttccattctttctggacctcatgtggcaaagcatcatggcagaaggcatggtgaaatatg 175
Query: 364 actgctctcttcctgctatccaggatgcagaaaagaggaaaggagggtccagggacaaaa 423
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 174 actgctctcttcctactatccaggatgcagaaaagaggaaaggagggcccagggacaaaa 115
Query: 424 cataatcttcaaagttacaccctcaaaaacctaatttttctagctaggcccagctcctac 483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 cataatcttcaaagttataccctcaaaaacctaatttttctagctaggcccagctcctac 55
Query: 484 agcttctactatactatagcttagcttctgaggaccaagccttcaacataagaa 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 54 agcttctactatactatagcttagcttctgaggaccaagccttccacataagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_o10.g1 MSMg01no382_o10.g1 CHROMAT_FILE:
MSMg01no382_o10.g1 PHD_FILE: MSMg01no382_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:46 2005
(245 letters)
>mm_chr18_42780880_42781524
Length = 645
Score = 420 bits (217), Expect = e-122
Identities = 238/245 (97%)
Strand = Plus / Plus
Query: 1 ttttactatctagagactatccataagctctgtgagtctagaggaccctgactaatacac 60
||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 201 ttttactatatagagactatccataagttctgtgactctagaggaccctgactaatacat 260
Query: 61 cccttaatgaaagggagcttgggaattagcagtgagggatctcttcttctcttccactca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cccttaatgaaagggagcttgggaattaacagtgagggatctcttcttctcttccactca 320
Query: 121 aaatttgttgaaaaggtcatgtttcccagttgggaggatcttttccagtcttattgctaa 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatttgttcaaaaggtcatgtttcccagttgggaggatcttttccagtcttattgctaa 380
Query: 181 gaacagaacttaccctgtagctagttcactgatatttcagccagagcgagggacaccctc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gaacagaacttaccctgtagctagttcactgatatttcagccagagcgggggacaccctc 440
Query: 241 atagg 245
|||||
Sbjct: 441 atagg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
