Query= MSMg01no383_b20.b1 MSMg01no383_b20.b1 CHROMAT_FILE:
MSMg01no383_b20.b1 PHD_FILE: MSMg01no383_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:04 2005
(484 letters)
>mm_chr18_75743906_75744789
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Minus
Query: 1 tcctgagttgaaagttgtccgtaggaagcaaaaagcttgtgataaagccctgtgccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctgagttgaaagttgtccgtaggaagcaaaaagcttgtgataaagccctgtgccatgg 625
Query: 61 cctataaattctacctgacccagctgataacataatggttaagctggccaaaggctgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctataaattctacctgacccagctgataacataatggttaagctggccaaaggctgcct 565
Query: 121 gtgtgagggataatggttgctgttctattcgtatgacacacacatacagagggggaagga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 gtgtgagggataatggttgctgttctattcatatgacacacacatacagagggggaagga 505
Query: 181 gggagggagagagagagctccccaaccaagatcccatgggtgtgttttacaaacacacca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggagggagagagagagctccccaaccaagatcccatgggtgtgttttacaaacacaccg 445
Query: 241 aaaatgcccggaaagcccattgtggtttttgtaccctccagatcattatttcagcatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaatgcccggaaagcccattgtggtttttgtaccctccagatcattatttcagcatact 385
Query: 301 cgccaggtcaaatagaaacattcacttggcaagaaaggaaaagatgtccctttctgtggc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgccaggtcaaatagaaacattcacttggcaagaaaggaaaagatgtccctttctgtggt 325
Query: 361 cctcctgccaacaccaagaggagcattgttctgtcaggctggcgtgtggtgagtcaaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctcctgccaacaccaagaggagcattgttctgtcaggctggcgtgtggtgagtcaaccc 265
Query: 421 ggtgcatccctcccttccacggggtcctttgaggacacccgaagggcagcagccttgggg 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgcatccctcccttccacagggtcctttgaggacacccgaagggcagcagccttgggg 205
Query: 481 gctg 484
||||
Sbjct: 204 gctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_b20.g1 MSMg01no383_b20.g1 CHROMAT_FILE:
MSMg01no383_b20.g1 PHD_FILE: MSMg01no383_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:04 2005
(506 letters)
>mm_chr18_75582085_75582984
Length = 900
Score = 928 bits (480), Expect = 0.0
Identities = 497/506 (98%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 1 tctccctcacagacttttttctaacagaattccttctcacacacagaattccttctcaca 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tctccctcacagacttttttctaacagaactccttctcacacacagaattccttctcaca 260
Query: 61 aacaaaaggggtgtctagagaaagccagccagagcaaggctttaaggagcagtacccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaaggggtgtctagagaaagccagccagagcaaggctttaaggagcagtacccagg 320
Query: 121 cacacggccacgtagtcccagaggacatacatgaagctcctgctcttaacccccctgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacggccacgtagtcccagaggacatacatgaagctcctgctcttaacccccctgtta 380
Query: 181 tgaccaccagcagtaaatagcaaaacccaaaacaataaatccagacaagggggcgctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaccaccagcagtaaatagcaaaacccaaaacaataaatccagacaagggggcgctaac 440
Query: 241 catgatggctttacctagctgagcggctgcggtgggggacctggcggtaaataaacgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgatggctttacctagctgagcggctgcggtgggggacctggcggtaaataaacgagc 500
Query: 301 aaaaagactgtaaatcaccctgggagaccagatcgatacacagggaacttgacccaactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagactgtaaatcaccctgggagaccagatcgatacacagggaacttgacccaactc 560
Query: 361 tcaccagggagtgtgtgtgccaatagtcctgagcaacggggtggggactctccaggctct 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaccagggagtgtgtgtgccagtagtcctgagcaacggggtggggactctccaggctct 620
Query: 421 gctggtacggagaagaggaaaccctgtttggaacacagggtcgcagcccggctctgctgg 480
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gctggtacggagaag------ccctgtttggaacacagggtcgcagcccgcctctgctgg 674
Query: 481 gagcttgcggagctaccccggggctg 506
||||||||||||||||||||||||||
Sbjct: 675 gagcttgcggagctaccccggggctg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 900
Length adjustment: 10
Effective length of query: 496
Effective length of database: 890
Effective search space: 441440
Effective search space used: 441440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
