Query= MSMg01no383_e13.b1 MSMg01no383_e13.b1 CHROMAT_FILE:
MSMg01no383_e13.b1 PHD_FILE: MSMg01no383_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:18 2005
(347 letters)
>mm_chr18_40579272_40580019
Length = 748
Score = 630 bits (326), Expect = 0.0
Identities = 332/334 (99%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 13 gaattctctaagcctctgttctcaccagaggcctgtaggaggagtcaggagatagtcatt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctctaagcctctgttctcaccagaggcctgtaggaggagtcaggagatagtcatt 272
Query: 73 ttcatttcaaaagcatcaattgccaaactctcatagcagagactgctgctggggaatgag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcatttcaaaagcatcaattgccaaactctcatagcagagactgctgctggggaatgag 332
Query: 133 ctaaggtgtggctgtggctgttggtgcacacaaggaacaca-ggaggagactctcagtca 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 ctaaggtgtggctgtggctgttggtgcacacaaggaacacaaggaggagactctcagtca 392
Query: 192 gagagtgcgccccatttctgttataataaataagcatgccattccaaatctaactgcagt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gagagtgcgccccatttctgttataataaataagcatgccattccaaatctaactgcagt 452
Query: 252 tcccacatcctcatatccactaccctttcttttcccttcccttcccttcccttcccttcc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcccacatcctcatatccactaccctttcttttcccttcccttcccttcccttcccttcc 512
Query: 312 cttcccttcccttcccttcccctcccttcccttc 345
||||||||||||||||||||| ||||||||||||
Sbjct: 513 cttcccttcccttcccttcccttcccttcccttc 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space: 249782
Effective search space used: 249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_e13.g1 MSMg01no383_e13.g1 CHROMAT_FILE:
MSMg01no383_e13.g1 PHD_FILE: MSMg01no383_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:18 2005
(500 letters)
>mm_chr18_40703365_40704257
Length = 893
Score = 886 bits (458), Expect = 0.0
Identities = 487/500 (97%), Gaps = 7/500 (1%)
Strand = Plus / Minus
Query: 1 cacctactactgcataagagcaatctctctcaaacattctttctgcttttgtctgtgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cacctactactgcataagagcaatctctctcaaacattctttctgcttttgtctgtgtaa 634
Query: 61 gcttttattcccctggtctgctgggttcagtatggtggacaatttctgtcttagttgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gcttttattcccctggtctgctgggttcagtatggtggacaatttctgtcttagttgagg 574
Query: 121 tggccaaaaaaaatcagtctatagaaacaaaccagagcctacagcccacaccatatggtt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tggcc--aaaaaatcagtctatagaaacaaaccagagcctacagcccacaccata----- 521
Query: 181 tgggtgactgtatctaaggatgcctatgccttggaatcctttccttctgatgcttggatt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggatgactgtatctaaggatgcctatgccttggaatcctttccttctgatgcttggatt 461
Query: 241 tcagggcttcatgtgactatgcacacagtccgtatgggagcaggtgctgtggagtcagaa 300
|||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 460 tcagggcttcttgtgaccatgcacacagtccatatgggaacaggtgctgtggagtcagaa 401
Query: 301 taagacactaactgtcaccagtcatttacatgagagctgtgtaaaagaagccctagcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taagacactaactgtcaccagtcatttacatgagagctgtgtaaaagaagccctagcctg 341
Query: 361 agtccacggatggagctccaaacccaggttgctcacacctgaagcagagcctccccttct 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agtccacagatggagctccaaacccaggttgctcacacctgaagcagagcctccccttct 281
Query: 421 tggagtctcagattttctctccttgtatttgaccagggatgaatccgcaatttccaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tggagtctcagattttctctccttgtatttgaccagggatgaatccgcaatttccaagtg 221
Query: 481 agggtctcaaaactgcaaag 500
||||||||||||||||||||
Sbjct: 220 agggtctcaaaactgcaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 893
Length adjustment: 10
Effective length of query: 490
Effective length of database: 883
Effective search space: 432670
Effective search space used: 432670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
