BAC Information

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BAC

Clone NameMSMg01-383K02
Chromosome18 (Build37)
Map Location 49,568,559 - 49,569,074
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383K02.T7 (MSMg01no383_k02.b1)MSMg01-383K02.TJ (MSMg01no383_k02.g1)
ACCAG487255AG487256
length812755
length of high quality
(start - end)
109 (64 - 172)521 (69 - 589)
definitionCHROMAT_FILE: MSMg01no383_k02.b1 PHD_FILE: MSMg01no383_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:43 2005CHROMAT_FILE: MSMg01no383_k02.g1 PHD_FILE: MSMg01no383_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAATTCTTGC
TGTTTTTTCGTTATATTTTATTTTATTATTTTTTTGGTTTGATGTGGTAA
TTCTTTTTTATTATATATATATGTATATATATACATATATATATATGTAT
ATATATATATATATGTATACATACACAGATATACCCCCTCCCACCGAATT
ACCACTTCACACCAACAAACTGATAAAACAGCATGAACTGCGCGAACCGC
CAGCATTCCGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNTCCCCCCTCCCCCCC
CCCCCAATCTCCCCCCTCCCCCCCCCTCCCCCTCCCCCTTTCTTTCCCCC
CCTCCCCTCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCCCTTTCCCTC
TTCCCCTCCCCCCCCCTCCCCCCCCCCCTCCCCCCTCCCCTCCTCTCTCT
CCCCCCCCCCTCCTCCATTTTTCCCCCCCCCCCCCCTCTCCCCCCCCCGC
CCCCCCCCCCTCCTCTCTCTCCCTCTTCTCCCCCCCCTCCTCCCTCCTTC
CCTTCCTCCCCCTCCCCCCCCCCCCCCCCCCCCCTCCCCCCTCCCTCCCC
CCCTCCCTCCCTTCTCCCCCCCCCTCCCATCCACCCCTCCCCCCCTCCTC
CCCTCCCTTCCCCCCCCCCCCATTCCCCCCTCCCCACCTCCTCCCATTCC
CCTCCCCCTCCCCTCGCCCCTCCCCCCCCCCCTCTCCTCCCCCCCTCCCC
CCTTCCTCCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTGTATCAAGGAAGAAGGGGAAAGAAATAG
ACACAACCTTAAATGCAAAAGGGCTATGTAGCCACCTCATATTAACTATA
AAAAGCAGAGTGTGAACTGCAACTGATGCCTAGTTGTCATATCATATCCT
GCTAATCACAACCAATATGAAATAATGACCATGAGATAATGTTCTTAAAA
TCACAAGCTAGTATTTGCTGCTCTTATATATTCATCTGAAGCATATGAAT
AGTATGGAACAGATGCAGGGGAGAGGCCTGGAAATGGAGGTTGGTTGCTA
GGGAAAGCACTTGCCTAGCATGCACCAAGCCCTGGGCTTGATTCCCAGCA
CTGTGTATAATCATGTAAGGTGGCAGACATCTGCAATCCCAGTACACAGG
AATTAGAGGCAGGAGGATTAGAGGTCATTATTTTTTAGCTACAGGTCAAA
TTCAAGGCCAGCCTAGGATACATGAGGCCTGATTTTGGAAGGGAGAGATT
GAGAGAGAGAGGGAGAGAGGTAAGGAGAGAATGAATGAATGAATGAATGA
ATTGATGAATGAATTATTCTTTTTTGTTTACCTCCGCTTTCTATTCTTCG
TTCTCTTTCTCTTTCTTGTTTATTTTCCCCTCCCGTTAATCCATCTCTTT
TTATTCCGCTTTATTTTTTTTCTCATCTCTCCCCTTCTCCTTTTTTTTTT
TCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_k02.g1 MSMg01no383_k02.g1 CHROMAT_FILE:
MSMg01no383_k02.g1 PHD_FILE: MSMg01no383_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:43 2005
         (521 letters)



>mm_chr18_49568354_49569274
          Length = 921

 Score =  928 bits (480), Expect = 0.0
 Identities = 507/516 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   tatcaaggaagaaggggaaagaaatagacacaaccttaaatgcaaaagggctatgtagcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 tatcaaggaagaaggggaaagaaatagacacaaccttaaatgcaaaagggctacgtagcc 265

                                                                       
Query: 66  acctcatattaactataaaaagcagagtgtgaactgcaactgatgcctagttgtcatatc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acctcatattaactataaaaagcagagtgtgaactgcaactgatgcctagttgtcatatc 325

                                                                       
Query: 126 atatcctgctaatcacaaccaatatgaaataatgaccatgagataatgttcttaaaatca 185
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atatcctactaatcacaaccaatatgaaataatgaccatgagataatgttcttaaaatca 385

                                                                       
Query: 186 caagctagtatttgctgctcttatatattcatctgaagcatatgaatagtatggaacaga 245
           |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 386 caagctagtatttgctgctcttatgtattcatctgaagcatacgaatcgtatggaacaga 445

                                                                       
Query: 246 tgcaggggagaggcctggaaatggaggttggttgctagggaaagcacttgcctagcatgc 305
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 446 tgcaggggagaggcctggaaatggagcttggttgctacggaaagcacttgcctagcatgc 505

                                                                       
Query: 306 accaagccctgggcttgattcccagcactgtgtataatcatgtaaggtggcagacatctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accaagccctgggcttgattcccagcactgtgtataatcatgtaaggtggcagacatctg 565

                                                                       
Query: 366 caatcccagtacacaggaattagaggcaggaggattagaggtcattattttttagctaca 425
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 566 caatcccagtacacaggaattagaggcaggaagattagaggtcattattttttaactaca 625

                                                                       
Query: 426 ggtcaaattcaaggccagcctaggatacatgaggcctgattttggaagggagagattgag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggtcaaattcaaggccagcctaggatacatgaggcctgattttggaagggagagattgag 685

                                               
Query: 486 agagagagggagagaggtaaggagagaatgaatgaa 521
           ||||||||||||||||||||||||||||||||||||
Sbjct: 686 agagagagggagagaggtaaggagagaatgaatgaa 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)