BAC Information

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BAC

Clone NameMSMg01-383P06
Chromosome18 (Build37)
Map Location 85,971,360 - 85,971,629
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P06.T7 (MSMg01no383_p06.b1)MSMg01-383P06.TJ (MSMg01no383_p06.g1)
ACCAG487503AG487504
length762794
length of high quality
(start - end)		468 (36 - 503)271 (67 - 337)
definitionCHROMAT_FILE: MSMg01no383_p06.b1 PHD_FILE: MSMg01no383_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:08 2005CHROMAT_FILE: MSMg01no383_p06.g1 PHD_FILE: MSMg01no383_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGA
GGTCTAAAGCAGCAGTCTGGGAACCTCAGGTACATTTCTGACCAACTGTC
GTGATTTCCCTTCAGGTTTTACAGCAGGCAGTGAAAAATAATCAGGTTGA
GAGAAGAATAACTTAGCAAGGCCTGCTTTTTGTTGCAACAGTGCTGGACA
AAGATTGCCAGAGTCTGTCCCAGATCATTTTCCTCTAGTCATATTTAAGC
ACAGTACATTGTGGAAAAAAAATATTAAGATTACAATTAATCCATTTTAA
CACAATTTTTTAAATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATT
TACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACT
CCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGG
GGCATATAAAGTTTGCAAGTCCAATGAGCCTCTCTTTGCAGTGATGGCCA
ACTAGGCCATCCTTTGAAACACATGCCCCTAGAGACAAGAGCTCCGGGAT
ACTGCCTAGTTCATAATGTTGTTCCACCCAAAGGGTCGCAGATCCCCTTT
ATTGCTTGGCTGCTTTCTCACACCCGTCCTTGAGGGCCCCGGGGGTCTAT
CAATACTTGCCTCGGAGCCTCCCTCCCGTGGTTGCTCGACCCCTNCTAAT
CCCTAAAAAAAACTCTTTTCTTGCCCCTTTCCCCAAACCCTTCTAATGAT
TCGCATGTTGCA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTTAATGGA
GGAGCTAGAGAAAGTACCCAAGGAGCTATAGGGATCTGCACCCCTATAGG
TGGAACAACATTATGACCTAACCAGTACCCCAGAGCTCTTGACTCTAGCT
GCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCC
CATTGGACAAGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC
AAAAGGGGGAAGTGGGTGGTTAGGGGAGTTGGGGTGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGNGGGGGGGGGNNNNNGNNNNNNNNN
NNNNNNNNGNNNNNNNNNGNNNNNNGGGNNGGGGGGGGNGGGGGGNNNGG
NNGGGGGGGGGGGGGGGGGGNNGGGGGGGNNGNNNGGGGGGGGNNGGGGG
GGNGGGGGNNGGGGNGGGGGGGGGGNGGGGGGGGGGGNNNGGGGGGGGGG
GNNNGGGGGGGGNNGGNNGGNGGGNGGGGGGNNNGNGGGGGCCCGGGGNG
GNNGNGGGGGGNNNGGGGGNGGGNGGNNGGGCCGGGGNGGNGGGGNGGGG
GGGGGGGGGNNNGNGGGGGNGNGGGGGNGGNNNGGNGGGGGGNNGGGGGN
GGGGGNNNGGGGGGGNNNGGGGGGNGGGGGGGNNGGGGGGGGNGGGGGGN
NGGGCGGGNTTGGGNNNNGNNNGGGNNGGGGGGGGGGGNNGNGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p06.b1 MSMg01no383_p06.b1 CHROMAT_FILE:
MSMg01no383_p06.b1 PHD_FILE: MSMg01no383_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:08 2005
         (468 letters)



>mm_chr18_85971262_85972130
          Length = 869

 Score =  433 bits (224), Expect = e-125
 Identities = 260/272 (95%), Gaps = 4/272 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgaggtctaa-agcagcagtctgggaacctcaggtacatttctgaccaact 62
           ||||| |||||||||| || |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 368 ggaatccaatgaggtc-aatagcagcggtctgggaaactcaggtacatttctgaccaact 310

                                                                       
Query: 63  gtcgtgatttcccttcaggttttacagcaggcagtgaaaaataatcaggttgagagaaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtcgtgatttcccttcaggttttacagcaggcagtgaaaaataatcaggttgagagaaga 250

                                                                       
Query: 123 ataacttagcaaggcctgctttttgttgcaac-agtgctggacaaagattgccagagtct 181
           |||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 249 ataacttagcaaggcctgatttttgttgcaaccagtgctggacaaaaatttccagagtct 190

                                                                       
Query: 182 gtcccagatcattttcctctagtcatatttaagcacagtacattgtggaaaaaaaatatt 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 189 gtcccagatcatttttctctagtcatatttaagcacagtacattgtggaaaaaat-tatt 131

                                           
Query: 242 aagattacaattaatccattttaacacaattt 273
           ||||||||||||||||||||||||||||||||
Sbjct: 130 aagattacaattaatccattttaacacaattt 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space:   393422
Effective search space used:   393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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