BAC Information

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BAC

Clone NameMSMg01-384B11
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B11.T7 (MSMg01no384_b11.b1)MSMg01-384B11.TJ (MSMg01no384_b11.g1)
ACCAG487609AG487610
length838747
length of high quality
(start - end)
184 (54 - 237)373 (65 - 437)
definitionCHROMAT_FILE: MSMg01no384_b11.b1 PHD_FILE: MSMg01no384_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:18 2005CHROMAT_FILE: MSMg01no384_b11.g1 PHD_FILE: MSMg01no384_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGCCGCTATTCGACTCACTATTCCGAGAGGATCCGCGGAATTCCAGGGAA
ATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGAT
AGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCAAATAGTTCACAG
ACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCCCACCCCTCCCTC
AGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTG
TTGTGACATAATTCACATATCTCGTCAATTTCCTATGTCTTTATTTCTTT
CATCTATTTATTTTTTTCACTATATTGCTTTTGATTATTTCTGCTTTTTA
TTTTTTTCTTTTTCTTTTTTTTTTTTCCATTGTCTTTTTCGTTTCTCTTT
CTTTATATTTCCTTTATTTATGTCGCTACCTTTTTGTTTCCTCCTTTTTT
TTTTTCTTCGTATTGTTATTCTTTGTTTATTTCAGCTTTCCATTTTTCCC
CCGTTCGATATCTCATATGTTTGCTTTGTTCATCTTTTTTCCCCTTTTTT
TTCCTTTCTCTGTTTTCCGCTGGCTCTCTTTTTTTTCTCCCCTCTTTTAT
GCTTCCCTTTTTTCTTCTTTTCCTTTTTTTTCTTTTTCTGTTTTCACTCC
CCACCTTTCTTTTTTCCCCTCTCATTTCATTCTATATATTTCGTCCTTTT
GCTTTCACTTCCACTCTCCGTCCTTATTCCTTTTCTTCCTCTCCCCCTTC
TCTTCTCCTCTCTCTTTCCTCTCCTTTCTCTTTTCACTCCGTGTGAGTTC
TTTTCGGACCGCCTTACTCCTCGCCTTTCTCTATACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTC
TGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTT
TGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCT
CCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAG
GAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTAC
TTCATGTTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTATCTTGCAAT
CTACTGGGCTTATGTTTGATTCCTGCAACCTTTTTTTCTAATTCTTTTTC
CTTTTTATATCTTACTTTATTTTTCTCTACTCCCCTTATCTGATTTCCAT
CTACTTCCTCTCCTCTACTTTTTTTCTTTGCTCTTTTCTCTTCCCCCCTT
TTTTTTCACCTTCTCCCCCTCCGTTCCTTCTTCCTTCCTTTCTTTTTACC
CCTTTTTTCTTCCTCTCTTTCTCCTATACCTCTTTTTCCTCCTTTTCTCC
CCCCCCCTCCTTGCTTTTTTTTTTCCCCTGTTTCCTTCCCCTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b11.g1 MSMg01no384_b11.g1 CHROMAT_FILE:
MSMg01no384_b11.g1 PHD_FILE: MSMg01no384_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:18 2005
         (373 letters)



>mm_chr18_40467476_40468247
          Length = 772

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space:   277732
Effective search space used:   277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)