Query= MSMg01no384_g16.b1 MSMg01no384_g16.b1 CHROMAT_FILE:
MSMg01no384_g16.b1 PHD_FILE: MSMg01no384_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:42 2005
(527 letters)
>mm_chr18_47250193_47251119
Length = 927
Score = 739 bits (382), Expect = 0.0
Identities = 388/390 (99%)
Strand = Plus / Minus
Query: 5 gaattcttaggcattgctggaaggagcagaaacattgaaataactgtttggggaaacaat 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattcttaggcattggtggaaggagcagaaacattgaaataactgtttggggaaacaat 331
Query: 65 gtagcaatatccatcagaggcctcgaaataaatataaacacatttaaggcatttgtatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtagcaatatccatcagaggcctcgaaataaatataaacacatttaaggcatttgtatat 271
Query: 125 gtattcacttgtctgaaaatatagaaaccaaaccatttatcacaaccaaataagcacttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtattcacttgtctgaaaatatagaaaccaaaccatttatcacaaccaaataagcacttc 211
Query: 185 taaccctactattatcctgctacaggaacatcgcaataaaatgagtcctgatgacatttc 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 210 taaccctactattatcctgctacaggaacattgcaataaaatgagtcctgatgacatttc 151
Query: 245 tgtctatctgtagatcagtgaggcactcagccctcatcagaagagcttctctttgcagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgtctatctgtagatcagtgaggcactcagccctcatcagaagagcttctctttgcagta 91
Query: 305 gaccagaaggaacagacagacccacagatggacagtgtgcagagagggagagacttcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gaccagaaggaacagacagacccacagatggacagtgtgcagagagggagagacttcaca 31
Query: 365 gctctcagtcctaaaggactgagtttatca 394
||||||||||||||||||||||||||||||
Sbjct: 30 gctctcagtcctaaaggactgagtttatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_g16.g1 MSMg01no384_g16.g1 CHROMAT_FILE:
MSMg01no384_g16.g1 PHD_FILE: MSMg01no384_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:42 2005
(517 letters)
>mm_chr18_47089608_47090524
Length = 917
Score = 886 bits (458), Expect = 0.0
Identities = 504/532 (94%), Gaps = 23/532 (4%)
Strand = Plus / Plus
Query: 1 tcattaaggagaagtgacagtacaatacaatatttgtatttttttaaaccaccaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 194 tcattaaggagaagtgacagtacaatacaatatttgtatttttttaaactaccaaacaaa 253
Query: 61 aatgattaat--gtattgtttttaattttgtgaatatatgaatgcaagtgcccatagagt 118
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatgattaatatgtattgtttttaattttgtgaatatatgaatgcaagtgcccatagagt 313
Query: 119 ttcagatctccctgaaactagagttacaggtgattgtgagccatcctaggtggatgctgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttcagatctccctgaaactagagttacaggtgattgtgagccatcctaggtggatgctgg 373
Query: 179 ggactgaactcaagtcctgtggaagaacagtatgcactcttaa----ccactgagctttc 234
||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||
Sbjct: 374 ggactgaactcaagtgctgtagaagaacagtatgcgctcttaattaaccactgagctttc 433
Query: 235 tctccagtcccatttatgcataattttttaaaaccatatatatctaatcatatatatata 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctccagtcccatttatgcataattttttaaaaccatatatatctaatcatatatatata 493
Query: 295 tatatatactttaaaaatcatatatatatata---------atcatatatatcaatataa 345
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 --------ctttaaaaatcatatatatatatatatatataaatcatatatatcaatataa 545
Query: 346 gagcataccatagggagaagtttgataaattcaaatacgttaataatgtcttaattagaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gagcataccatagggagaagtttgataaattcaaatacgttaataatgtcttaattagaa 605
Query: 406 ggcattcctgataatgtctgattacaaggctgttatgaaatatgtggcaaggtacgcccc 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 606 ggcattcctgataatgtctgattacaaggctgttatgaaatatgtggcaaggtatgcccc 665
Query: 466 tgagtaattactccatgcaacagatctgatataaagggtgtttgctgggtaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgagtaattactccatgcaacagatctgatataaagggtgtttgctgggtaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
