Query= MSMg01no384_o07.b1 MSMg01no384_o07.b1 CHROMAT_FILE:
MSMg01no384_o07.b1 PHD_FILE: MSMg01no384_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:18 2005
(532 letters)
>mm_chr18_81999129_82000061
Length = 933
Score = 901 bits (466), Expect = 0.0
Identities = 513/529 (96%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttgtttcgcttgtgtccctgagtcgacagcactgtcacatgacagc-cagcg 63
||||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 205 gaattcatttgcttggcttgtgtccctgagtcgacagcactgtcacatgaca-ctcagcg 263
Query: 64 gcagcgcaataggctgtgatgtttctcaatgagtttgaaatagaaaatagcccagatgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcagcgcaataggctgtgatgtttctcaatgagtttgaaatagaaaatagcccagatgaa 323
Query: 124 aagtggagatgccattctgatacccagtgaggtgacacccgtgttttcgtggggtcaaga 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 aagtggagatgccattctgatacccagtgaggtgacacccgtgtttccgtggggtcaaga 383
Query: 184 ttggggtgcagtgatagggaccctctgcccctgatagggatcctgggttgcagatacagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggggtgcagtgatagggaccctctgcccctgatagggatcctgggttgcagatacagc 443
Query: 244 agctcaactcagatattaccgttaaaaactaatctgtgcagctgggagtgtggtggttct 303
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 444 agctcgactcagatattaccgttaaaaactaagctgtgcggctgggagtgtggtggttct 503
Query: 304 gcagtcgtctggaattcataacatttgctctctagcactaccaaagcaataagtaagtga 363
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcagttgtctggaattcataacgtttgctctctagcactaccaaagcaataagtaagtga 563
Query: 364 acaaaataaaatgaacgcagaaatgaagacacgtcagatgatcccccttcacgtaaaa-c 422
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 564 acaaaataaaatgaacgcagaaatgaagacacgtcagatcatcccccttcacgtaaaaac 623
Query: 423 caacagctgaaacgctgaagatgccagtgtgctaacaagggccccgtgtggacacagagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caacagctgaaacgctgaagatgccagtgtgctaacaagggccccgtgtggacacagagc 683
Query: 483 tctggccacgtggcgcccttatttccattggtttcagnggccacgtggc 531
| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 684 tgtggccacgtggcgcccttacctccattggtttcagtggccacgtggc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_o07.g1 MSMg01no384_o07.g1 CHROMAT_FILE:
MSMg01no384_o07.g1 PHD_FILE: MSMg01no384_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:18 2005
(588 letters)
>mm_chr18_82182636_82183623
Length = 988
Score = 1129 bits (584), Expect = 0.0
Identities = 587/588 (99%)
Strand = Plus / Minus
Query: 1 tggtaaattgacaaagcacatcaatggtcatggttggccgtggcacccgaagcaaggtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tggtaaattgacaaagcacatcaatggtcatggttggccgtggcacccgaagcaaggtgt 729
Query: 61 tatctacctaaaataagagctaaaacaagctatgaaacagtcttgagaggagactgagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tatctacctaaaataagagctaaaacaagctatgaaacagtcttgagaggagactgagac 669
Query: 121 agacagacagacagaaaatgaggcatggaggccacaaaagagctaagtgacaatcaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agacagacagacagaaaatgaggcatggaggccacaaaagagctaagtgacaatcaacag 609
Query: 181 cactgattgaaagccagactagccttgaccaaaaactagcagcaatagaatgtagatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cactgattgaaagccagactagccttgaccaaaaactagcagcaatagaatgtagatgtt 549
Query: 241 gctgccaacatgaatggttctgtggacccaagtggaaaactaaatcaactgcttagataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gctgccaacatgaatggttctgtggacccaagtggaaaactaaatcaactgcttagataa 489
Query: 301 aggtttatcaaggacatagacatgaaagaaaagaatacttccaaagcaccaacatataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggtttatcaaggacatagacatgaaagaaaagaatacttccaaagcaccaacatataag 429
Query: 361 cggttatatttgtggtgaggttggggtccctcttccacatagatcagcaaagaactcaag 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 428 cggttatatttgtggtgaggttggggtcccccttccacatagatcagcaaagaactcaag 369
Query: 421 tttccccttcccaccttagtggtgatggtccatcattcagtgcagtcacgcagctgccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttccccttcccaccttagtggtgatggtccatcattcagtgcagtcacgcagctgccca 309
Query: 481 ttcttgtgttttataaagctaatgccaggtttggagccatttcccccctggacactgccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttcttgtgttttataaagctaatgccaggtttggagccatttcccccctggacactgccc 249
Query: 541 ccatgtgcatctctaaccgatgaggagatttgaaggttattatattta 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccatgtgcatctctaaccgatgaggagatttgaaggttattatattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
