Query= MSMg01no384_p11.b1 MSMg01no384_p11.b1 CHROMAT_FILE:
MSMg01no384_p11.b1 PHD_FILE: MSMg01no384_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:23 2005
(549 letters)
>mm_chr18_13469101_13470049
Length = 949
Score = 1046 bits (541), Expect = 0.0
Identities = 544/545 (99%)
Strand = Plus / Plus
Query: 5 gaattctccatggttgttacttgctaccattgagcctggtggtgtctttgtgttgatgtc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatgggtgttacttgctaccattgagcctggtggtgtctttgtgttgatgtc 264
Query: 65 tctttacggtgatcctagctggctcaaagcttggtaagtgctctctcaggccttgagggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttacggtgatcctagctggctcaaagcttggtaagtgctctctcaggccttgagggg 324
Query: 125 cctgcagagactgtgaatactgaaattaacatctccatcgagagggcagctgtagctcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgcagagactgtgaatactgaaattaacatctccatcgagagggcagctgtagctcag 384
Query: 185 gccttgaactcctacatagctcctgacaaataccagtgcagtgaggttacttttgaaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccttgaactcctacatagctcctgacaaataccagtgcagtgaggttacttttgaaaac 444
Query: 245 ttaagtttaatctgccagcaccaagagctcaactacttccagttctttcttctacctttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaagtttaatctgccagcaccaagagctcaactacttccagttctttcttctacctttg 504
Query: 305 tgggacagagccgggtaacaggtgggagaggctctccatgctgtctgtggctctgattga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggacagagccgggtaacaggtgggagaggctctccatgctgtctgtggctctgattga 564
Query: 365 aatgaaagctatttttaaaggcttttataacatcaagtactattgttttgtgatcagttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgaaagctatttttaaaggcttttataacatcaagtactattgttttgtgatcagttt 624
Query: 425 ttacattgcattattatctccccaacactactgattactacttcctatggattatgcagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacattgcattattatctccccaacactactgattactacttcctatggattatgcagg 684
Query: 485 tctaaaatattagttttaccattctctaccagtggccatggggaatatatagggagaact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctaaaatattagttttaccattctctaccagtggccatggggaatatatagggagaact 744
Query: 545 gcggc 549
|||||
Sbjct: 745 gcggc 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_p11.g1 MSMg01no384_p11.g1 CHROMAT_FILE:
MSMg01no384_p11.g1 PHD_FILE: MSMg01no384_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:24 2005
(536 letters)
>mm_chr18_13690175_13691109
Length = 935
Score = 723 bits (374), Expect = 0.0
Identities = 420/440 (95%), Gaps = 9/440 (2%)
Strand = Plus / Minus
Query: 97 atcttgcagcttacacaaaggtggtcccataggttctgtgttgtcaccatcttaggattg 156
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 935 atcttgcagcttacacaaaggtggtcccataagttctgagttgtcaccatcttaggattg 876
Query: 157 taagcatgctctacatgctatttctacaacaaattcaatgaatagcccatttctcaaaat 216
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 875 taagcatgctctacatgctatttctacaacaaattcagtgaatagcccatttctcagaat 816
Query: 217 atatatgtatgcatgcatatatatatgtatgtatgtagatatgtatacatatatatatat 276
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 815 atatatgtatgcatgcatatatatatgtatgtatgtagatatgtatatatatatatatat 756
Query: 277 atacacacacacacacacacatatatatggctgtgttcctcttttatatgtgctatgatg 336
|| ||| | | | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 755 at--------acatatatatatatatatggctgtgttcctcttttatacgtgctatgatg 704
Query: 337 ctatgatgaatttaagccatgtggctataaatacatttatgataaatgtgaaacttattt 396
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctatgatgaatttaag-catgtggctataaatacatttatgataaatgtgaaacttattt 645
Query: 397 agtccatacacagaatgatagaaatactttttaaaacatttcattttacctttcactttg 456
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 644 agtccatacacagaatgatagaaatattttttaaaacatttcattttacctttcactttg 585
Query: 457 tatgttttctacataactatgtgaaggtgagtcaggtggccttggaggtgagcagaggcg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tatgttttctacataactatgtgaaggtgagtcaggtggccttggaggtgagcagaggcg 525
Query: 517 ctcagatccactggagctgg 536
||||||||||||||||||||
Sbjct: 524 ctcagatccactggagctgg 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
