BAC Information

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BAC

Clone NameMSMg01-385B07
Chromosome18 (Build37)
Map Location 88,843,540 - 88,844,037
singlet/doubletsinglet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385B07.T7 (MSMg01no385_b07.b1)MSMg01-385B07.TJ (MSMg01no385_b07.g1)
ACCAG488365AG488366
length754748
length of high quality
(start - end)		493 (49 - 541)567 (60 - 626)
definitionCHROMAT_FILE: MSMg01no385_b07.b1 PHD_FILE: MSMg01no385_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:32 2005CHROMAT_FILE: MSMg01no385_b07.g1 PHD_FILE: MSMg01no385_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCCACATTAGCTTGG
TGGTAGAGTTATCCCAGAGCTGTACCTTTGAGAACAACATTGCTATAAAT
TAGAAGATTTCATTTTCTGTCTTTATTTTTTTTTTTGAATTTTTTCTTGT
GTGTGTGTGTTTTGTCTGCTTCTCTCTGTGAAAGTTCTTAAACTTTTGTT
TATTGTTTCAGTAAACAAGCTTTACTCGATAAAAGGAAAGAGCTAGATCG
GTAGCTTCACAAACTCCCAGTGATATTCTTCTGACGTGCGCTGCCCCAGT
TTTGTAAATGAGAAGCCAGGCCATCTCAGTTCTCTCTCTAAGCAGTACCA
GCTGTCTTCTCTTTCCAGCACTGCAGAGATGCTTTGAAGCAACTTCTGAA
TTGTTGGCAACATGAGTGCAGAAAGATGTGAAGACCATAATAGCTGGGAA
AGGTTATCCAGTTTCACATAATTGACTACGGCAATATAAAATATTGCCTG
CTCTGTTTGGTAACGAAACTGATATTGCTTTCTTCCCTGTTTGAAAGGGA
ACAAAGCAAACAGAATTGCCTCTGTTGTTAAATTTCCAGGTTAAAAGTCG
AAAATCTGGGTTGTAAAGAATGCTTTTTACTGGCTGTGTTTGGGAAAATG
AAATTCTATCCTGTTGTAAAAAAATTATGTTTTCAACCAAAGAAATTCTG
AATTTTTTTCCCCTCTTTTTTTTAAAAAGGCAAATGGTTTCTTATACTAA
TTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGG
TTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATA
GTGAATCAAAAACAGTATCGTATTCCTGGAGGAATTGCAGAAATTACTGC
CACTATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCACCACATCTC
CGTTCAACTCTCCTATCTGGCCAGTGCAGAAAACAGATGGATCATGGAGA
ATGACAGTTGATTATCGAAAACTAAATCAGGTAGTAACTCCAATTGCAGC
TGCTGTACCAGATGTAGTTTCGTTACTTGAGCAAATTAACACATCTCCTG
GCACCTGGTATGCGGCTATTGATCTGGCAAATGCCTTCTTCTCAGTACCT
GTCCATAAGGACCACCAGAAGCAATTTGCTTTCAGTTGGCAAGGCCAACA
GTATACCTTCACAGTTTTGCCTCAAGGATATATTAACTCTCCTGCCCTGT
GTCATAATTTAGTTAGAAGGGATCTTGATCGTTTGGATCTTCCACAAAAT
ATCACGTTGGTGCACTATATTGATGACATTATGCTGATTGGACCAAGTGA
GCATGAAGTACCAACCACTTTGGACTCATTGTTAACACATATGCCTATCA
TATGATGGGAAAATAACCCACCCAAAATTCTAGTGACATCCTACCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_b07.b1 MSMg01no385_b07.b1 CHROMAT_FILE:
MSMg01no385_b07.b1 PHD_FILE: MSMg01no385_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:32 2005
         (493 letters)



>mm_chr18_88843340_88844237
          Length = 898

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 5/498 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtggtagagttatcccagagctgtacctttgagaacaacattgctataaattagaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggtggtagagttatcccagagctgtacctttgagaacaacattgctataaattagaagat 639

                                                                       
Query: 61  ttcattttctgtctttatt-tttttttttgaat----tttttcttgtgtgtgtgtgtttt 115
           ||||||||||| ||||||| |||||||||||||    |||||||||||||||||||||||
Sbjct: 638 ttcattttctgcctttattatttttttttgaattgagtttttcttgtgtgtgtgtgtttt 579

                                                                       
Query: 116 gtctgcttctctctgtgaaagttcttaaacttttgtttattgtttcagtaaacaagcttt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtctgcttctctctgtgaaagttcttaaacttttgtttattgtttcagtaaacaagcttt 519

                                                                       
Query: 176 actcgataaaaggaaagagctagatcggtagcttcacaaactcccagtgatattcttctg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 actcgataaaaggaaagagctagatcggtagcttcacaaactcccagtgatattcttctg 459

                                                                       
Query: 236 acgtgcgctgccccagttttgtaaatgagaagccaggccatctcagttctctctctaagc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acgtgcgctgccccagttttgtaaatgagaagccaggccatctcagttctctctctaagc 399

                                                                       
Query: 296 agtaccagctgtcttctctttccagcactgcagagatgctttgaagcaacttctgaattg 355
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 398 agtaccagctgtcttctctttccagcactgcagagatgctttgaagcgacttctgaattg 339

                                                                       
Query: 356 ttggcaacatgagtgcagaaagatgtgaagaccataatagctgggaaaggttatccagtt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttggcaacatgagtgcagaaagatgtgaagaccataatagctgggaaaggttatccagtt 279

                                                                       
Query: 416 tcacataattgactacggcaatataaaatattgcctgctctgtttggtaacgaaactgat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 278 tcacataattgactacggcaatataaaatattgcctgctctgtttggtaacgaaacagat 219

                             
Query: 476 attgctttcttccctgtt 493
           ||||||||||||||||||
Sbjct: 218 attgctttcttccctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 898
Length adjustment: 10
Effective length of query: 483
Effective length of database: 888
Effective search space:   428904
Effective search space used:   428904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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