Query= MSMg01no385_i03.b1 MSMg01no385_i03.b1 CHROMAT_FILE:
MSMg01no385_i03.b1 PHD_FILE: MSMg01no385_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:06 2005
(267 letters)
>mm_chr18_81711146_81711813
Length = 668
Score = 485 bits (251), Expect = e-142
Identities = 260/263 (98%)
Strand = Plus / Plus
Query: 5 gaattctttcattgcctccacagtccagggcccttgcaggctcacagggttcccaggctc 64
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gaattctttcagtggctccgcagtccagggcccttgcaggctcacagggttcccaggctc 128
Query: 65 attgccgataatgtggtggtggcaacactgttgctccggctctgcagggttggtggcaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 attgccgataatgtggtggtggcaacactgttgctccggctctgcagggttggtggcaac 188
Query: 125 accatagctgtggctctgcagggttggtggcagcactgtagctgtgactctgcagggttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 accatagctgtggctctgcagggttggtggcagcactgtagctgtgactctgcagggttg 248
Query: 185 gtggcaacactgtagctgcagctctgcagggttggtggcaacaccatagctgtggctctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtggcaacactgtagctgcagctctgcagggttggtggcaacaccatagctgtggctctg 308
Query: 245 cagggttggtggcagcactgtag 267
|||||||||||||||||||||||
Sbjct: 309 cagggttggtggcagcactgtag 331
Score = 265 bits (137), Expect = 2e-75
Identities = 176/189 (93%), Gaps = 3/189 (1%)
Strand = Plus / Plus
Query: 81 tggtggcaacactgttgctccggctctgcagggttggtggcaacaccatagctgtggctc 140
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tggtggcaacactgtagctgcagctctgcagggttggtggcaacaccatagctgtggctc 306
Query: 141 tgcagggttggtggcagcactgtagctgtgactctgcagggttggtggcaacactgtagc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgcagggttggtggcagcactgtagctgtgactctgcagggttggtggcaacactgtagc 366
Query: 201 tgcagct-ctgcaggg-ttggtggcaacaccatagctgtggctctgcagggttggtggca 258
|| | | |||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 367 tgt-gattctgcaggggttggtggcaacactgtagctgcagctctgcagggttggtggca 425
Query: 259 gcactgtag 267
||||||||
Sbjct: 426 acactgtag 434
Score = 209 bits (108), Expect = 1e-58
Identities = 156/172 (90%), Gaps = 1/172 (0%)
Strand = Plus / Plus
Query: 81 tggtggcaacactgttgctccggctctgcagggttggtggcaacaccatagctgtggctc 140
|||||||||||| | ||| ||||||||||||||||||||| ||| |||||||| |||
Sbjct: 281 tggtggcaacaccatagctgtggctctgcagggttggtggcagcactgtagctgtgactc 340
Query: 141 tgcagggttggtggcagcactgtagctgtgactctgcaggg-ttggtggcaacactgtag 199
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 341 tgcagggttggtggcaacactgtagctgtgattctgcaggggttggtggcaacactgtag 400
Query: 200 ctgcagctctgcagggttggtggcaacaccatagctgtggctctgcagggtt 251
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 401 ctgcagctctgcagggttggtggcaacactgtagctgcagctctgcagggtt 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 668
Length adjustment: 9
Effective length of query: 258
Effective length of database: 659
Effective search space: 170022
Effective search space used: 170022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no385_i03.g1 MSMg01no385_i03.g1 CHROMAT_FILE:
MSMg01no385_i03.g1 PHD_FILE: MSMg01no385_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:06 2005
(337 letters)
>mm_chr18_81873340_81874077
Length = 738
Score = 600 bits (310), Expect = e-176
Identities = 331/338 (97%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 1 aggcagacaagtttttttttttt-ccagtgctgtatttattgtctgttagaccgttactt 59
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 538 aggcagacaagttttttttttttcccagtgctgtacttattgtctgttagaccgttactt 479
Query: 60 ttctgtccttttcttttctttgtgagatctagcatggaatttggtgtctttccgtgtgca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttctgtccttttcttttctttgtgagatctagcatggaatttggtgtctttccgtgtgca 419
Query: 120 ttctcctgtgaaatcagcttgcttgttttttcagaatgtgtagagatggagatgtaatct 179
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 418 ttctcctgtgaaatcagcttgctcgttctttcagaatgtgtagagatggagatgtaatct 359
Query: 180 gcatcttctatgtcagagttcctccgactgatgccttacaagttcgggacagggatcttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcatcttctatgtcagagttcctccgactgatgccttacaagttcgggacagggatcttc 299
Query: 240 atccttaattcaaagttcctctgccatttctgctggcattcaagtgtagggcaaccactt 299
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 298 atccttaagtcaaagttcctcggccatttctgctggcattcaagtgtagggcagccactt 239
Query: 300 tctggggtcctttgctttccttcacaactttatctgga 337
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tctggggtcctttgctttccttcacaactttatctgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 738
Length adjustment: 9
Effective length of query: 328
Effective length of database: 729
Effective search space: 239112
Effective search space used: 239112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
