BAC Information

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BAC

Clone NameMSMg01-385L20
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385L20.T7 (MSMg01no385_l20.b1)MSMg01-385L20.TJ (MSMg01no385_l20.g1)
ACCAG488869AG488870
length733749
length of high quality
(start - end)		466 (33 - 498)464 (64 - 527)
definitionCHROMAT_FILE: MSMg01no385_l20.b1 PHD_FILE: MSMg01no385_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:23 2005CHROMAT_FILE: MSMg01no385_l20.g1 PHD_FILE: MSMg01no385_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGGGAA
ATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGAT
AGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCAAATAGTTCACAG
ACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCCTACCCCTCCCCC
AGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTG
CTGTGAGAGAATTTAGATAGCTCGAAGAAATAAATAGCTGGAGACTTCAT
TCATTTACTTATTTTATTGAGTATATGGTGAAAGAGGGAAAATGGCTCGA
AAAGGAGGGAGGGCAGACTGTCTTCCCATGCTGGGATCATTCATGCCTTA
AGAAGGAATGCAGGAGGCTGGAGAGATGGCTCAGCGGTTTAGAGCCCTGA
CTGCTCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCAAATGGTGGGT
NGGTCANAACCACCCTCACAGTNATATGCTGCCCTCTTCTACGTGTTCTT
AACTGTTTTTTTGTACTTCACTTCATATATTTTTCTTAATTCTAAGGCCT
AATATTTTTTTCTGTTTTTTCATTTCCTTTTTTTTTTTTTTCCTTTCTTT
TACCTTTTTGAGTTCCTTTGCATTTCTCTCTCCTTTTTTCTTTTTTTTTT
TTTCATTATTTTTCTCCTTCCTTTTTTTTCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCT
GGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTT
GGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTC
CACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGG
AATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACT
TCATGTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGC
TGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCT
AGTGGGCTTATGTTTGATTCCTGGAATCTTTTTTTCTAATTCTTTTTCCT
TTTTATATTTTATTTTATTTTATTTTATTTTACTTTATTTTACTTTATTT
TATTTTATTTTATTTTACTTCAACTCATTCCACTTCAATTTCCGTCTTTT
CCCCTTTTCCCTTTTTCTTTCTTCTTTCCTCCCACCTTTCCTAATCTTTT
CTCCAATATTTTCCCCCCCCCTCTTCTTTTTTTTCTCCTTTTCCCTCCTC
CATACATTTATCTTTTCATTATTCTTTTTTCTTCTCTTCTCTCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_l20.g1 MSMg01no385_l20.g1 CHROMAT_FILE:
MSMg01no385_l20.g1 PHD_FILE: MSMg01no385_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:23 2005
         (464 letters)



>mm_chr18_40467476_40468338
          Length = 863

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space:   387262
Effective search space used:   387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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