Query= MSMg01no385_p22.b1 MSMg01no385_p22.b1 CHROMAT_FILE:
MSMg01no385_p22.b1 PHD_FILE: MSMg01no385_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:43 2005
(461 letters)
>mm_chr18_20333120_20333980
Length = 861
Score = 862 bits (446), Expect = 0.0
Identities = 455/458 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcgcccagccattatctggtcagttttaaaatattaagtctctagtgttctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcgcccagccattatctggtcagttttaaaatattaagtctctagtgttctc 263
Query: 64 cttcctcggggctaaagggagcaggagaagagagcaggcagtcaggcgttatctggtatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttcctcggggctaaagggagcaggagaagagagcaggcagtcaggcgttatctggtatc 323
Query: 124 accaaacaacagccccctaaaccgccatcaacaaggaaagtgaaatatgcaacagctact 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccaaacaacagccccctaaaccgccatcaacaaggaaagtgaaatatgcaacagctact 383
Query: 184 ctaatgtacagagatgcttgtttcccttttaattcagacaaaagctgaagtttaagatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaatgtacagagatgcttgtttcccttttaattcagacaaaagctgaagtttaagatgg 443
Query: 244 cctcaaacttgccaagcagccaaggatgacctgtatgttctgaccctctgtcctacactt 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 cctcaaacttgccaagcagccaaggatgacttgtatgttctgaccctctgtcctacactt 503
Query: 304 cctagatgcattataggcacacactgtcagcccaggtttaacgtggtgctgggaatcaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctagatgcattataggcacacactgtcagcccaggtttaacgtggtgctgggaatcaaa 563
Query: 364 tccagggctttgtgcatgggagaaaagctctctgcccagtgaggttcatcccaggcccca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccagggctttgtgcatgggagaaaagctctctgcccagtgaggttcatcccaggcccca 623
Query: 424 gatgttttgtttgtgtgtgtgtacgtgtgtgtgtgtgg 461
||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 gatgttttgtttgtgcgtgtgtacgtgtgtgtgtgtgg 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_p22.g1 MSMg01no385_p22.g1 CHROMAT_FILE:
MSMg01no385_p22.g1 PHD_FILE: MSMg01no385_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:43 2005
(524 letters)
>mm_chr18_20533816_20534739
Length = 924
Score = 961 bits (497), Expect = 0.0
Identities = 518/525 (98%), Gaps = 2/525 (0%)
Strand = Plus / Minus
Query: 1 agaaga-tgcacttcaggtgaggtggttaaacattagtgttgattcctgagcacagggcc 59
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agaagact-cacttcaggtgaggtggttaaacattagtgttgattcctgagcacagggcc 674
Query: 60 aagacttcacaaggagccaattaggacagagaaaggctgcccacacatgcagcactggaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagacttcacaaggagccaattaggacagagaaaggctgcccacacatgcagcactggaa 614
Query: 120 gaccttgtggtgagcaagaatgttgagccatacacagcaacagtcaaagactctcttgga 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613 gaccttgtggtgagcaagaatgttgagccatacacagcaacagtcaaagactctgttgga 554
Query: 180 atatcttcccttatatacctgctcagaatcccgactagagctggacatcctcagggtttg 239
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 553 atatcttcccttatatacctgctcagaatcccgactggaactggacatcctcagggtttg 494
Query: 240 ttatggcactctgaaataaggccagtgtgataacatgtagattattgtcagagaatgctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttatggcactctgaaataaggccagtgtgataacatgtagattattgtcagagaatgctc 434
Query: 300 agcttgtcccagaaaaggaagatctctctggggaccagtctctacggtgttgtcattttg 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 433 agcttgtcccagaaaaggaagatatctctggggaccagtctctacggtgttgtcattttg 374
Query: 360 atattcatgtgtggcaacacttgacagaggtttgaaatgtcacatgactcattggcgaac 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctattcatgtgtggcaacacttgacagaggtttgaaatgtcacatgactcattggcgaac 314
Query: 420 tcattgggtggaaaagggcgtcctgtgcttgcagtgagtaaaattggttgataggaattg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcattgggtggaaaagggcgtcctgtgcttgcagtgagtaaaattggttgataggaattg 254
Query: 480 gatgccatgactaaacaaaataacgagaggagcaggctgaattcc 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatgccatgactaaacaaaataacgagaggagcaggctgaattcc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
