Query= MSMg01no386_a21.b1 MSMg01no386_a21.b1 CHROMAT_FILE:
MSMg01no386_a21.b1 PHD_FILE: MSMg01no386_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:47 2005
(721 letters)
>mm_chr18_33433459_33434579
Length = 1121
Score = 1239 bits (641), Expect = 0.0
Identities = 699/719 (97%), Gaps = 4/719 (0%)
Strand = Plus / Plus
Query: 6 gaattcacctcgagtattcactacccagttttttggagttctcatcttcagttgttcttt 65
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaatccacctcgagcactcactacccagttttttggagttctcatcttcagttgttcttt 263
Query: 66 ctcttgtctctgtgggtttccgtttccttgatagcgttcccatgtcacccatgtttcact 125
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 ctcttgtctctgtgggcttccgtttccttgacagcgttcccatgtcacccatgtttcact 323
Query: 126 ttcttcaccatttccacatcttagtttatttctttgaacattctttaaggtacttgtctt 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ttcttcaccatttccacatcttagtttatttatttgaacattctttaaggtacttgtctt 383
Query: 186 taaggctttgtctaggataa--ttttttttcaggaatgatttctgtaaattagaggttta 243
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaggctttgtctaggataaatttttttttcaggaatgatttctgtaaattagaggttta 443
Query: 244 tggtttaaaatgatctatgattttctgtttcttcatgcgccttgtgatttttgtttaaaa 303
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tggtttaaagtgatctatgattttctgcttcttcatgcgccttgtgatttttgtttaaac 503
Query: 304 aatggttatttaggtgtaatgttctaagagtgagaaaatcaaattctttccattcctatg 363
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 aatggttatttaggtgtaatgttctaagagtgagaaaatcaaatcctttccattcctatg 563
Query: 364 aattttctacatctgattattgctctttattattatttatgctaaggactcatctgaaat 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 aattttctacatctgattattgctctttattattattaatgctaaggactcatctgaaat 623
Query: 424 acaaatttaagtgattgctggcttttaagcagttgt-cttaatatttccctcggcatata 482
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 624 acaaatttaagtgattgctggcttttaagcagttgttct-aatatttccctcggcatata 682
Query: 483 tggtcacactctagatttctttatgtattcagttgttttatttttaatatactttttctc 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggtcacactccagatttctttatgtattcagttgttttatttttaatatactttttctc 742
Query: 543 ctattgaaaattgatttatttcatgatatagtctacttacagtttccctccctgtacttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctattgaaaattgatttatttcatgatatagtctacttacagtttccctccctgtacttc 802
Query: 603 ctccagattctagtcacccctcctcttcccctccagattcatgccctttctgtctctcat 662
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttccagattctaatcacccctcctcttcccctccagattcatgccctttctgtctctcat 862
Query: 663 tagaaaacaaacacatgtctaagggacaataataaaataaaatagaacaaaatcggaat 721
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 863 tagaaaacaaacacaagtctaagggacaataataaaataaaacagaacaaaatcggaat 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no386_a21.g1 MSMg01no386_a21.g1 CHROMAT_FILE:
MSMg01no386_a21.g1 PHD_FILE: MSMg01no386_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:47 2005
(684 letters)
>mm_chr18_33609207_33610290
Length = 1084
Score = 1284 bits (664), Expect = 0.0
Identities = 679/684 (99%), Gaps = 2/684 (0%)
Strand = Plus / Minus
Query: 1 catgatgcctttctacatggaactgtgggcccctggatttatatagtctgtctctgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 catgatgcctttctacatggaactgtgggcccctggatttatatagtctgtctctgggtt 824
Query: 61 cccacaacccccacatgtttctcatgctcttctcgtggaaaagtagagttttgatgtttg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 823 cccacaacccccacatgtttctcatgctcttcttgtggaaaagtagagttttgatgtttg 764
Query: 121 gtttatagtggaataaagacttgggatgggaagtaaaatagagggctggtgggtaaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gtttatagtggaataaagacttgggatgggaagtaaaatagagggctggtgggtaaagtc 704
Query: 181 agggtttagaaagatggtgtggttttaaaatgggattttcctggtggttagaatgcaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agggtttagaaagatggtgtggttttaaaatgggattttcctggtggttagaatgcaagt 644
Query: 241 gggacccctgtcaagcgcttttccttccaactgggggttcctttcacagacgccttcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gggacccctgtcaagcgcttttccttccaactgggggttcctttcacagacgccttcaca 584
Query: 301 cccctggaagcagtgtttctttcttgatgctttgctctggaacactctttccacttggag 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 583 cccctggaagcagtgtttctttcttgatgccttgctctggaacactctttccacttggag 524
Query: 361 tggaggtcttcctctggtcctctgcctcccaggactcctcaacagaaagatgccttcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tggaggtcttcctctggtcctctgcctcccaggactcctcaacagaaagatgccttcagc 464
Query: 421 cttcagaccttgcttcactgagtgtcattgaaatcccggcagtgttcagagctgtagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cttcagaccttgcttcactgagtgtcattgaaatcccggcagtgttcagagctgtagccc 404
Query: 481 atccattctgagcttattccgtttcttgtgtccttttaggcgtgtgctag-tttgtctag 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 403 atccattctgagcttattccgtttcttgtgtccttttaggcgtgtgctagttttgtctag 344
Query: 540 aggacaggctatgagaatctgcttagtggcctctttcgacctgggcacctataggatgta 599
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 343 aggacaggctatgagaatctgcttagtggcctctttcgacctgggcagcta-aggatgta 285
Query: 600 cacacggatctgtcgatactgttcctttatgtgcaaagagcagactttatgtgctgtgtc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cacacggatctgtcgatactgttcctttatgtgcaaagagcagactttatgtgctgtgtc 225
Query: 660 ttcctgtggagaaagctctttccc 683
||||||||||||||||||||||||
Sbjct: 224 ttcctgtggagaaagctctttccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
