| Query= MSMg01no386_g17.g1 MSMg01no386_g17.g1 CHROMAT_FILE:
MSMg01no386_g17.g1 PHD_FILE: MSMg01no386_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:13 2005
(689 letters)
>mm_chr18_17272803_17273891
Length = 1089
Score = 1122 bits (580), Expect = 0.0
Identities = 654/690 (94%), Gaps = 22/690 (3%)
Strand = Plus / Minus
Query: 1 atagtttttcctaatgaaactcttcttcacatctgttgttctacaaagcattaagaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 834 atagtttttcctaatgaaactcttcttcacatctgttgttctacaaagcatgaagaagtt 775
Query: 61 aaagagtagttgcataaataaataaatttgtacataacattagatctgtgtatagggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaagagtagttgcataaataaataaatttgtacataacattagatctgtgtatagggtta 715
Query: 121 gtgatatatatatatatatatatatatatatcactatatatatcacataagaagaagagc 180
|||| ||||||||||||||||||||||| ||||||||| | |||||
Sbjct: 714 gtgagatatatatatatatatatatata------tatatatat----------ggagagc 671
Query: 181 cacttgtattaatttgtttacctaagtaattgtgatttgtacctactcctgagaagtatg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 670 cacttgtattaatttgtttacctaagtaattgtgaattgtacctactcctgagaagtatg 611
Query: 241 aactaagaacctgtacgcagctcatctgattttcctcagtggttaaattgtgcaaatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aactaagaacctgtacgcagctcatctgattttcctcagtggttaaattgtgcaaatttc 551
Query: 301 tgctatagtttcattttcaagttattattagccaccatctatcaccggagatgatactag 360
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 550 tgctatagtttcattttcaagttattattagccaccatctagcaccggaaatgatactag 491
Query: 361 gagacctcatcaaccccttaccactttgcaaattatgatatgctatctattttagtcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gagacctcatcaaccccttaccactttgcaaattatgatatgctatctattttagtcatt 431
Query: 421 ttgtttctagaaagtgcaataaattacatcgatatgtaaattacaaaatgaggtcttcta 480
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 430 ttgtttctagaaagtgctataaattacattgatatgtaaattacaaaatgaggtcttcta 371
Query: 481 ccattgatatctgaggtgcttattttgagccattacaaacaatactgctataaactctgg 540
||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 370 ccattgatatctgagatgcttattttgagcccttacaaacaatactgctataatctctgg 311
Query: 541 t-gagaaaatttggaagtaaaagtgagatctcaattgctgggattcattctacaagtgta 599
| || |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 310 tgga-aaaatttggaagtaaacgtgagatctcaattgctggaattcattctacaagtata 252
Query: 600 attgctaggatgagctagaggtgcatgtttaacactttggttttcttttatgacatctaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 attgctaggatgagctagaggtgcatgtttaacactttggttttcttttatgacat---- 196
Query: 660 ctgttttcaaaatggctggcacagctgaca 689
||||||||||||||||||||||||||||||
Sbjct: 195 ctgttttcaaaatggctggcacagctgaca 166
Score = 56.8 bits (29), Expect = 6e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 124 atatatatatatatatatatatatatatc 152
|||||||||||||||||||||||||||||
Sbjct: 682 atatatatatatatatatatatatatatc 710
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 124 atatatatatatatatatatatatatat 151
||||||||||||||||||||||||||||
Sbjct: 678 atatatatatatatatatatatatatat 705
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 124 atatatatatatatatatatatatatat 151
||||||||||||||||||||||||||||
Sbjct: 680 atatatatatatatatatatatatatat 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
