Query= MSMg01no386_n14.b1 MSMg01no386_n14.b1 CHROMAT_FILE:
MSMg01no386_n14.b1 PHD_FILE: MSMg01no386_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:44 2005
(278 letters)
>mm_chr18_64540488_64541165
Length = 678
Score = 516 bits (267), Expect = e-151
Identities = 276/279 (98%), Gaps = 2/279 (0%)
Strand = Plus / Plus
Query: 1 aaaattaccaatctgagtccatagaattccttctggaaaggggggaaaggcgtggtgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattaccaatctgagtccatagaattccttctggaaaggggggaaaggcgtggtgccg 260
Query: 61 tggggagctcacctcatggtaggtaa-ccaaatgactattcccatcgctgagctagaaat 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tggggagctcacctcatggtaggtaaaccaaatgactattcccatcgctgagctagaaat 320
Query: 120 gagctgggactcccttacaatccacagaaggaggcagggccacaaacagctggaagcatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctgggactcccttacaatccacagaaggaggcagggccacaaacagctggaagcatc 380
Query: 180 ctggattcacactggtctcgccagcaccaagtccagttactgtatgttccccctgctttc 239
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctggattcacactgg-ctcgccagcaccaagtccagttactatatgttccccctgctttc 439
Query: 240 ttctcttgggaaggaaggaagaggaagggatacggttag 278
|||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctcttgggaaggaaggaagaggaagggatacggttag 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_n14.g1 MSMg01no386_n14.g1 CHROMAT_FILE:
MSMg01no386_n14.g1 PHD_FILE: MSMg01no386_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:44 2005
(556 letters)
>mm_chr18_64731689_64732643
Length = 955
Score = 1052 bits (544), Expect = 0.0
Identities = 553/556 (99%), Gaps = 1/556 (0%)
Strand = Plus / Minus
Query: 1 tcttatcatttttagaataaaatgctgggttttttttttcttgaggaattttcagtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tcttatcatttttagaataaaatgctgggttttttttttcttgaggaattttcagtagaa 862
Query: 61 ttattgagtacttaaccacatgaggacattttaacaactatgtaattattatcacacgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttattgagtacttaaccacatgaggacattttaacaactatgtaattattatcacacgag 802
Query: 121 gatgctgaggcccagggaggtggagtagcctggcgaaggtcacataagaagggacagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatgctgaggcccagggaggtggagtagcctggcgaaggtcacataagaagggacagtca 742
Query: 181 cggctctgctccttgtggcccctgtttctcataccccagctacggatccaaggctttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cggctctgctccttgtggcccctgtttctcataccccagctacggatccaaggctttatg 682
Query: 241 gagagctattaatcacaggaggggaaagctggccttctcttgccccgtatatcagctggt 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagagcta-gaatcacaggaggggaaagctggccttctcttgccccgtatatcagctggt 623
Query: 301 tgattgttcaatcttagagatggcatagcccttactcccagggctgagaaattctgaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgattgttcaatcttagagatggcatagcccttactcccagggctgagaaattctgaaac 563
Query: 361 tttccagagacaggaagtcatgtcttgtcagaactgaagggtggagctgggatcatcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttccagagacaggaagtcatgtcttgtcagaactgaagggtggagctgggatcatcagt 503
Query: 421 caatgtcctaaagagtgaagactcccttgttactgactacgcctgagaaggcagcctggc 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caatgtcccaaagagtgaagactcccttgttactgactacgcctgagaaggcagcctggc 443
Query: 481 cctcatgagctcatgagctcagctgccatcatggagcactcccatggagcactcccactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctcatgagctcatgagctcagctgccatcatggagcactcccatggagcactcccactt 383
Query: 541 gcttttctttaggctg 556
||||||||||||||||
Sbjct: 382 gcttttctttaggctg 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
