Query= MSMg01no386_p16.b1 MSMg01no386_p16.b1 CHROMAT_FILE:
MSMg01no386_p16.b1 PHD_FILE: MSMg01no386_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:54 2005
(244 letters)
>mm_chr18_52434627_52435270
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Plus
Query: 1 gacatcagatcattaagaagtcactttcctaaaacacagagcttagcgggtcgcagagca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gacatcagatcattaagaagtcactttcctaaaacacagagcttagtgggtcgcagagca 260
Query: 61 gatgtgttgctgacagtaattcactgaacagagttaagcatccaagtgacaggaaatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtgttgctgacagtaattcactgaacagagttaagcatccaagtgacaggaaatcag 320
Query: 121 gtgttcagttttgcatagggaaagcactcgctcactctcaatcccaaggatgacactttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gtgttcagttttgcatagggaaagcactcgctcactctcaatcccaaggatgacacaggc 380
Query: 181 atcactccaacctttcttttgtcctaatgttgttacttagaagtttttatttttcagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcactccaacctttcttttgtcctaatgttgttacttagaagtttttatttttcagaac 440
Query: 241 act 243
|||
Sbjct: 441 act 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_p16.g1 MSMg01no386_p16.g1 CHROMAT_FILE:
MSMg01no386_p16.g1 PHD_FILE: MSMg01no386_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:54 2005
(682 letters)
>mm_chr18_52599461_52600543
Length = 1083
Score = 1013 bits (524), Expect = 0.0
Identities = 560/572 (97%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 1 tcacggcatcaatttattcccctgttaatgccatgttaatgcccccaatcaaggttacca 60
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcactgcatcaatttcttcccatgttaatgccatgttaatgcccccaatcaaggttacca 513
Query: 61 gtgacctagata-ctaacctgtaaatacagtggtgtaggaaaagataaccagtctattta 119
|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 512 gtgatctagatatataacctgtaaatacagtggtctaggaaaagataaccagtctattta 453
Query: 120 tttgccagattaggttatttgaaagtatgagatgaactagacttcctttctcccaggtgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tttgccagattaggttatttgaaagtatgagatgaactagacttcctttctcccaggtgt 393
Query: 180 gtcactgtctaatttagattcattgctgaagagtgtaatttttcatagcaaacttttcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtcactgtctaatttagattcattgctgaagagtgtaatttttcatagcaaacttttcac 333
Query: 240 atccattcctgaccatatgattgttattgatcccacaaagaattacatggcccaactcac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atccattcctgaccatatgattgttattgatcccacaaagaattacatggcccaactcac 273
Query: 300 aatagtgctgaagttgaaagctactcatctatgatcatgtctgattcaacaaactgcatt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 272 aatagtgctgaagttgaaagctactcatctatgatcatgtctgattcaacaaactgtatt 213
Query: 360 gtctaacaaagaaccaagggctggaatgtgtagatgctagccagttccaagtgtggtaac 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 212 gtctaacaaagaaccaagggctggaatgtgtagatgctagccagctccaagtgtggtaac 153
Query: 420 aaggcagcagaaaatacaaaatcagtaataatactaaatgccaatctgtttttattatta 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaggcagcggaaaatacaaaatcagtaataatactaaatgccaatctgtttttattatta 93
Query: 480 ctatgcgttataagcttctgactaagtcattgagaatatctcattcgttaaaaattttat 539
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 92 ctatgagttataagcttctgactaagtcattgagaatatctcattcattaaaaattttat 33
Query: 540 agatttatagctgcaatagcttgcaaagctaa 571
||||||||||||||||||||||||||||||||
Sbjct: 32 agatttatagctgcaatagcttgcaaagctaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
