BAC Information

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BAC

Clone NameMSMg01-388E10
Chromosome18 (Build37)
Map Location 28,535,445 - 28,535,682
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665646, EG271505
Downstream geneEG625997, BC051408, LOC100040930
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E10.T7 (MSMg01no388_e10.b1)MSMg01-388E10.TJ (MSMg01no388_e10.g1)
ACCAG490810AG490811
length784760
length of high quality
(start - end)
469 (35 - 503)238 (83 - 320)
definitionCHROMAT_FILE: MSMg01no388_e10.b1 PHD_FILE: MSMg01no388_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:34 2005CHROMAT_FILE: MSMg01no388_e10.g1 PHD_FILE: MSMg01no388_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACT
GAGGAATACGGAAAGGCTGAGAAGCACCTGACAAAATGTTCAACATCCTT
AATCACCAGGGAAATACAAATCAAAACAAACTTCAGATTCTGTCTCACTC
CAGTCAGAATGGCTAAGATCAAAAATTAAGGGGAGAGCAGATGCTGGGGA
GGATGTGGAGAAAGAGGAACAGTCCTCCATTGTTGGTGGGATTGCAAGCA
TGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACA
TAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCATATACCCAGAA
GATGTTTCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGTTGTCCCTCAACAG
AGGAATGGATACAGAAAATGTGTTACATTTACACAATGGAGTACTACTCA
GCTATTANAAACAATGAATTTATGAAATTCTTGGGCAAATGCATGTATCT
GGAGGATATCATCCTTAGTGAGGTAACCCCATCACACAAGAAGTCCCTTG
ATATGCCCTCCCTGGCGAATGGAAATTAGCCCAGAAACTTATAATAACCC
CAATAACATTTTGTGAAACTCCCGAAAAACCGAAATTAGACCCACGGGGG
GGTACTTCCTTCCCTCCTTATAAAAGGGAAAAAAAACCCCGGTAAGGGTT
TCCGAACCAAACTTTGGTGCTTATCGCCAGGAAG
NNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGACACAATTTCAAA
GGGTAAGAACAGACTGTTTCTGTAACCAAAGGATGCAGTCCCTGTCTCAT
TCAGACATCTTCAAATCTCCTCTCATTCATGTAGCCCTATCCTGAGTAGT
GAAAACTTTCACCCCATATATTGCACTGCACAATTGACTCGCTGCCTTGT
GGGTATGCGAGGAGCTCACTCTCCTCTGGTGCTCCACGTATCATCTGGTG
CCAGAGGCAGTAAGAATACAATATTGTATAGACCAATGGACTGATCCAAT
ATGGCAAATCCTATATTCCTGTTTGGGTACAAATGAATAACCTCATACAG
CTCTGCACACATTCAACAAAATGATGAAAGGGAGAGAGGAAAAATGGAAT
TTCCTGATCATTGCATTCCATTTTATTTTTCTGTTTTAACTTTGTAAGTG
AATTCAATGTCTGTACAAGGCAATTGAGGGCTCTAAAGGAGAATGAAAGA
AAAATGTTAGAAGTCCCAAACTACAGTCTGAACACTATAAGGCAGAATTC
CTCTCTCTTTCTGGAATCAACAGCTGGTTTCCTCATAACTTTTAGCTTTC
AAAGACCACCTCAGCATTTAAGGGCCACGGGATATTGGATTATACCGGTC
ATTGGTGGAGCAGATGGGCATGCTTATATATTTTTAAAAAAAATTTTCTC
TTTTTAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e10.g1 MSMg01no388_e10.g1 CHROMAT_FILE:
MSMg01no388_e10.g1 PHD_FILE: MSMg01no388_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:34 2005
         (238 letters)



>mm_chr18_28535245_28535882
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggacacaatttcaaagggtaagaacagactgtttctgtaaccaaaggatgcagtccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actggacacaatttcaaagggtaagaacagactgtttctgtaaccaaaggatgcagtccc 379

                                                                       
Query: 61  tgtctcattcagacatcttcaaatctcctctcattcatgtagccctatcctgagtagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtctcattcagacatcttcaaatctcctctcattcatgtagccctatcctgagtagtga 319

                                                                       
Query: 121 aaactttcaccccatatattgcactgcacaattgactcgctgccttgtgggtatgcgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaactttcaccccatatattgcactgcacaattgactcgctgccttgtgggtatgcgagg 259

                                                                     
Query: 181 agctcactctcctctggtgctccacgtatcatctggtgccagaggcagtaagaataca 238
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 agctcactctcctctggtgctccatgtatcatctggtgccagaggcagtaagaataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)