BAC Information

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BAC

Clone NameMSMg01-388O05
Chromosome18 (Build37)
Map Location 53,405,756 - 53,405,991
singlet/doubletsinglet
Overlap geneSnx24
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859
Downstream genePpic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O05.T7 (MSMg01no388_o05.b1)MSMg01-388O05.TJ (MSMg01no388_o05.g1)
ACCAG491275AG491276
length791747
length of high quality
(start - end)
235 (116 - 350)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no388_o05.b1 PHD_FILE: MSMg01no388_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:19 2005CHROMAT_FILE: MSMg01no388_o05.g1 PHD_FILE: MSMg01no388_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCTAAAAGAATACTACATCGTCACCCCCGCNGGAATCAACCCAATT
CCGATACACTTTAAATCTTCCTATAAGGGTCCAGAGCTGGTCTCTTCGAT
TGCTTCTACCCTGAGCAAGCTACCTGTCTGGAATTTCTGGGCGACTCTGA
GTTCAGGACCTGTGCTAAGGTAAAGCACCTGATTGTGCCGTTTCATGCCA
TTGCAGAACTAAAAAGAAACAAACTCAAAAAAAAAATCTAAAAAATAATC
AATCTATTAACCTGGCTAATGTGCACCCACAAAAATGTTGATTTTCTTCT
TTCTTTTTTTTCTCCCTTTCTTCCTTTATTTTTATATTTTCTTGGTAACC
CGTTCTCCACCTGAAAGAATCTTACAGAACTTGCAAGCCATCAAGAACCC
CCCACCCCCCCCCCCACTGNANGTAGAGGGTAGTCGGTCCGGCTCCTGAA
GCTCCCGACGCCGCGGCTCCCGTCACCCCAAGCCCTGCACCCCCATCCCT
CCCCCCCTCTTCACCTCTCCTCCATCCCCCTCTTTCCTCGCCCCCCCCTC
TCCCCCCCCCTCTCTCTCCTCCCCCCTCCTCCCCCTACTTTCCTTTTCAC
CCTCCCCTCCCCTTTTCCCTCCTCCTCCCTCTCCCCTCCCTCTTCTTTCC
CTCCTCCTCTCTCTCCCCTTCTCCTCCCCTTCCGTCCCCTCCTGACCTAT
CCTTCTCACCTTCCTCCTCCCACTCCCCTCTCTTACCCTGTCCTTCTTTC
CTTTCTCCTTTTCTACCCTCCTCCTCTTTCTCCTTTACTTT
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAATGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGTTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCTTTGATATTCATAAGAGAAATTGATCTG
AAATTCTCTATCTTTGTTGCATCTTTCTGAGGTTTAGGTATCAGAGTAAT
AGTGGTTTTTTCCCCCCCCCCCCCNAGAGNANCTTCTACTTCTATTTTGT
GAAATAGTTTGTGCAGAATTGGAATTATATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAACCCATCTGGTCCTGAGCTTTTTTTTGTTGCCAGACT
ATTAACACCTGCTTCCATTTCTTTAGCTCATATGCTCACCCCCCTATCGC
CCCCCTTCATTCTGACTCTCCTTGCCACCGCCCACTTCCCCCCATTTTTT
TTTTTTTTCTCTTGCTCTCCCCCACTCCCCGTTGATACCCTTCTTCCATT
TCTCCCTTCGCCCCCCTCCCCCCTCGTATTCGCTCCTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o05.b1 MSMg01no388_o05.b1 CHROMAT_FILE:
MSMg01no388_o05.b1 PHD_FILE: MSMg01no388_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:19 2005
         (235 letters)



>mm_chr18_53405614_53406249
          Length = 636

 Score =  395 bits (204), Expect = e-114
 Identities = 228/236 (96%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctacctgtctggaatttctgggcgactctgagttcaggacctgtgctaaggtaaag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 378 caagctacctgtctggaatttctgggcgactctgagttcaggacatgtgctaaggtaaag 319

                                                                       
Query: 61  cacctgattgtgccgtttcatgccattgcagaactaaaaagaaacaaactc-aaaaaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 318 cacctgattgtgccgtttcatgccattgcagaactaaaaagaaacaaactcaaaaaaaaa 259

                                                                       
Query: 120 aatctaaaaaataatcaatctattaacctggctaatgtgcacccacaaaaatgttgattt 179
           ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||
Sbjct: 258 aatctaaaaaataatcaatctattaacctggctaatgagcagtcacaaaaatgttgattt 199

                                                                   
Query: 180 tcttctttcttttttttctccctttcttcctttatttttatattttcttggtaacc 235
           | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttctttctttttttttttcctttcttcctttatttttatattttcttggtaacc 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)