Query= MSMg01no389_b20.b1 MSMg01no389_b20.b1 CHROMAT_FILE:
MSMg01no389_b20.b1 PHD_FILE: MSMg01no389_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:36 2005
(439 letters)
>mm_chr18_33767963_33768805
Length = 843
Score = 652 bits (337), Expect = 0.0
Identities = 355/363 (97%), Gaps = 4/363 (1%)
Strand = Plus / Minus
Query: 5 gaattctctgctaatcctatcagaggaactatggcactaagaa----agagagagagaga 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 363 gaattctctgctaaccctatcagaggaactatggcactaagaaagagagagagagagaga 304
Query: 61 gagagcaatcccccagatcttggaagctctatttttttcttattaatagctttattgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagagcaatcccccagatcttggaagctctatttttttcttattaatagctttattgacc 244
Query: 121 tttcggcttgttatagttcttttttttagtcattaaagatttttattagatattttcttt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttccggcttgttatagttcttttttttagtcattaaagatttttattagatattttcttt 184
Query: 181 atttacacttcaaatgttatcccctttcctagtttcccctctgaaaatccccaaccccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atttacacttcaaatgttatcccctttcctagtttcccctctgaaaatccccaaccccct 124
Query: 241 cccccgctccccaacccatccactcccaatcctggtcctggcattcccctatattggggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cccccgctccccaacccatccactcccaatcctggtcctggcattcccctatattggggc 64
Query: 301 ttagagccttcacaggaccaagggcctctcctcccattaatgaccgactaggccactctc 360
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 63 atagagccttcacaggaccaagggcatctcctcccattaatgaccgactaggccactctc 4
Query: 361 tgc 363
|||
Sbjct: 3 tgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 843
Length adjustment: 9
Effective length of query: 430
Effective length of database: 834
Effective search space: 358620
Effective search space used: 358620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_b20.g1 MSMg01no389_b20.g1 CHROMAT_FILE:
MSMg01no389_b20.g1 PHD_FILE: MSMg01no389_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:36 2005
(440 letters)
>mm_chr18_33609056_33609895
Length = 840
Score = 799 bits (413), Expect = 0.0
Identities = 434/441 (98%), Gaps = 2/441 (0%)
Strand = Plus / Plus
Query: 1 actcttctcctctatggactctcttctgctggcagcctgggctaccttggtattcggcaa 60
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 actcttctcctctgtggactctcttcggctggcagcctgggctaccttggtattcggcaa 260
Query: 61 aagccatttcatgggtcagtgcttcagagctctgtcctgtcgggtagactgaggtgactt 120
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccatttcatgggtcagtgctgcggagctctgtcctgtcgggtagactgaggtgactt 320
Query: 121 cacagcatcctaacagacctccaggtttggagggaaagagctttctccacaggaagacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagcatcctaacagacctccaggtttggagggaaagagctttctccacaggaagacac 380
Query: 181 agcacataaagtctgctctttgcacataaaggaacagtatcgacagatccgtgtgtacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacataaagtctgctctttgcacataaaggaacagtatcgacagatccgtgtgtacat 440
Query: 241 cctataggtgcccaggtcgaaagaggccactaagcagattctcatagcctgtcctctaga 300
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cct-tagctgcccaggtcgaaagaggccactaagcagattctcatagcctgtcctctaga 499
Query: 301 caaa-ctagcacacgcctaaaaggacacaagaaacggaataagctcagaatggatgggct 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaaactagcacacgcctaaaaggacacaagaaacggaataagctcagaatggatgggct 559
Query: 360 acagctctgaacactgccgggatttcaatgacactcagtgaagcaaggtctgaaggctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acagctctgaacactgccgggatttcaatgacactcagtgaagcaaggtctgaaggctga 619
Query: 420 aggcatctttctgttgaggag 440
|||||||||||||||||||||
Sbjct: 620 aggcatctttctgttgaggag 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
