BAC Information

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BAC

Clone NameMSMg01-390A14
Chromosome18 (Build37)
Map Location 77,776,591 - 77,776,924
singlet/doubletsinglet
Overlap geneRnf165
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1
Downstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A14.T7 (MSMg01no390_a14.b1)MSMg01-390A14.TJ (MSMg01no390_a14.g1)
ACCAG492147AG492148
length733751
length of high quality
(start - end)
249 (73 - 321)502 (83 - 584)
definitionCHROMAT_FILE: MSMg01no390_a14.b1 PHD_FILE: MSMg01no390_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:49 2005CHROMAT_FILE: MSMg01no390_a14.g1 PHD_FILE: MSMg01no390_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTATTATAATTGCGGCGCTAAACGACTCCTATATTCAGAAATCCGCG
GAATTCTAGACTCTTTCCAATTGATGAAATGCTAACTGGAGCTGCAGCAG
TGACTCCCATCACCCCTAACACTGCAGCACTTTAACACAGTCCCTAATGT
TCTGGTGACCCTCAACCATAAAATTATCTTCTCTCTATTTTACAACTGTC
ATTTTTCCACTGTTACGAATCATAATGTAAATACCTGATATACAGGGTAT
CTGTTATGTGGCCACCAAAGGGGTCATGACCTCTTAGGTTGACAACCACT
GATCTACAGAGTTCCTTGGAAAGTATCAACACACACACACACACACACAC
ACACACACACACACACACACATTAATATACCAACTTACCTTATCTATGAG
AATGTTGTACTTCTTAAAATTCAGGTCTCTAAAACTCTTTTTCAGTGTAG
TTTTATTTTCTTCTTCAACACAGTGTATGTCTTTGTCAAGTGTAACCACA
TAGATCTTACCATTTGTATTGTCACAAATGCTCTTACAAACGGCCCTTTC
TATTCGTTACTGATTAAATGCTTTCCATACGCTGAGTTGACAAATAACCA
TCCTTTAAGCTGTGTTTTAACTTTAATGATTTTTCTATACATTCTTTGAA
GGTTTTCTCTGCCAGCAAGTCTTCCTTTGCACACCTTGGTTGAGTTTCCA
GCTCCCTAACCACAAGGAGACTTTGTTACTTCC
NCCGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGTGGGTTCACTCT
TAGAGAGAGAGAGAGGTTGTGTCTATATTTATCTGTTGGGTAAGATGGAC
TTGGGTTCCAAAGACCTTAATAGAGAACAAAACGTGTTTGATAAAACATT
GAACTCTTTGCCCATATCTTAGTTACTTTTCTATTGCTCTGATAAAAACA
CCATGGCCAACACAATTTACAAAAGATAGTGTTTAATTTTGCTTATGGTT
TCAGAGGGTTAGAGTCCATGATGGCAGAGCATTGTGACAGCTGAGAACTC
ACATCTTGATCCATAACCATAAGGCTGAGAGAGAAACTAGAAATGTTATG
AGTCTCTTGAAACTTCAAAGCCCAGCCCCACGGACACACATTCTCTAACA
AGGCCATGCCTCCTAATCCTTCCCAAACAGTTCTACTAACTAGGGACCAA
ATATTCAAACAGACGACGCTACAGGGGTCATTCTCATTGAAACCGCCACA
CCCCATATCTCTGCCTTCTTTCTTTCTTTTCTTCCTCCACCTAAATACCT
ATGGNCACTGAATGGGNACCACATTTCCCAGGTCAGGGACTGGTTGTAAA
ATACAGCTGAATGAATGTGCCCGTTGAGTTCCCCCCAATTTCCTATGAGT
CAGGGGGTAACCAATTAACCCTTTTCAAAAAACTGGGCCGGGGGTTTCCG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a14.g1 MSMg01no390_a14.g1 CHROMAT_FILE:
MSMg01no390_a14.g1 PHD_FILE: MSMg01no390_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:49 2005
         (502 letters)



>mm_chr18_77776591_77777494
          Length = 904

 Score =  603 bits (312), Expect = e-177
 Identities = 328/334 (98%), Gaps = 2/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaagtgggttcactctt--agagagagagagaggttgtgtctatatttatctgttggg 58
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 334 actaagtgggttcactcttagagagagagagagaggttgtgtctatatttatctgttggg 275

                                                                       
Query: 59  taagatggacttgggttccaaagaccttaatagagaacaaaacgtgtttgataaaacatt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 taagatggacttgggttccaaagaccttaatagagaacaaaacgtgtttgataaaacatt 215

                                                                       
Query: 119 gaactctttgcccatatcttagttacttttctattgctctgataaaaacaccatggccaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 214 gaactctttgcccatatcttagttacttttctattgctctgataaaaacaccatagccaa 155

                                                                       
Query: 179 cacaatttacaaaagatagtgtttaattttgcttatggtttcagagggttagagtccatg 238
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cacaacttacaaaagatagtgtttaattttgcttatggtttcagagggttagagtccatg 95

                                                                       
Query: 239 atggcagagcattgtgacagctgagaactcacatcttgatccataaccataaggctgaga 298
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  atggcagagcaatgggacagctgagaactcacatcttgatccataaccataaggctgaga 35

                                             
Query: 299 gagaaactagaaatgttatgagtctcttgaaact 332
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  gagaaactagaaatgttatgagtctcttgaaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 904
Length adjustment: 10
Effective length of query: 492
Effective length of database: 894
Effective search space:   439848
Effective search space used:   439848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)