BAC Information

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BAC

Clone NameMSMg01-390C21
Chromosome18 (Build37)
Map Location 40,982,614 - 40,983,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041939, Yipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C21.T7 (MSMg01no390_c21.b1)MSMg01-390C21.TJ (MSMg01no390_c21.g1)
ACCAG492256AG492257
length737734
length of high quality
(start - end)
489 (120 - 608)524 (84 - 607)
definitionCHROMAT_FILE: MSMg01no390_c21.b1 PHD_FILE: MSMg01no390_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:01 2005CHROMAT_FILE: MSMg01no390_c21.g1 PHD_FILE: MSMg01no390_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTTTAGCTTTGTACACCATTTTTAATAGGGTTATTTGT
TTCTCTGTAGTCAAACCTCTTGTGTTCTTTGTATATATTAGATATTAGCC
CTCTATTGGATGTAGGGTTAGTGAAGATCTTTTCCCAATCTCTTGGTTGC
CGTTTTGTCTTATTGACAATATCCTTTGCCTTACAAAATCTTTGCAATTT
TATGAAGTCCCATTTTTCAATTTTTAATCTTAGAACATAAGCTATTGGTG
TTCTGTTCAGGAAAATTTCCCCTGTGCCCATGTGCTCTTATCCACACTCT
TTTCTATTAGTTTCTGTGTATCTGGTTTAATGTGGAGGTCCTTGATCCAC
TTGGACTTGAGCTTTGTACAAGAAGAAAAGAATGGATCGATTTGCCTTCT
TCTATATGATAACTGCCAGTTGAGCCAGCACCCTTTGTTAAAAATGCTGT
CTTTTTTTCCCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGACCAAATG
ACCATAGGGGTGTGGGTTCAATTTTGGGTCTTCAATTCTATTCCATTGAT
TTGCCTGCCTGTCACTGTACCAATACCATCAGTTTTTAACCACAATTGCT
CTGTAGTACAGCTTGAAGTCAGGGACAGTGATTCCACTANAAGTTCTTTT
ATTGGTGAGAATAGTCCTCCCTGCTTTAGCTTTTGGG
NNNNNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAAGAGCCTAAGA
CAAAAGACTTCCTACAAGATCACACATTTATGTTCTATCATCTTCCAGTT
TTGCCTCTCTGAAGAACAAGTGCTTGATACATGACTTGGGGGGACATTCC
AGGTTCACACACACCACAGTACACTGCAATATATAATCAAGTCTTGTTTC
TACAGATTTCAGCCAAGATATTCAGTGCGTCTCATATACTGCATTGTGGC
AGGTTTGTAATACAGCACAGCCTCAATTATTATATATTAAGGAAGAGGAA
ACTCCTACAATGTTAGTGGCCTCTAAGTGAAGTGGGAGTTTTACATACAG
AAACCAAACAAGAAGTAACTGCCGAGGTTGGGGGTCCCTATTTACTGCTG
TTGGGATTGGAAATCAGTGTAGCTACTGCAGATGTGAATACAGAGGTGCT
TAAAAATTAAAAATAGAATTTCCCTGTGCTTCAGACATCTGACTTCTGGA
TATTCACCTGANAGAATCAGTCAGCTTATTATAGAGGTATCTGGAAGCCC
ATGTTCACTGTGGTGTTTGTTCACAGTGCTCAATTCATAAAAGCAGCCTA
TGTGCCCACCAGCTGATTAAAGAACACATAATGTGTGGATATATATACTC
CACTCCATATAATAAAGAATGAAAATATACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c21.g1 MSMg01no390_c21.g1 CHROMAT_FILE:
MSMg01no390_c21.g1 PHD_FILE: MSMg01no390_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:01 2005
         (524 letters)



>mm_chr18_40982414_40983337
          Length = 924

 Score =  984 bits (509), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcaagagcctaagacaaaagacttcctacaagatcacacatttatgttctatcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcaagagcctaagacaaaagacttcctacaagatcacacatttatgttctatcatct 260

                                                                       
Query: 61  tccagttttgcctctctgaagaacaagtgcttgatacatgacttggggggacattccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagttttgcctctctgaagaacaagtgcttgatacatgacttggggggacattccagg 320

                                                                       
Query: 121 ttcacacacaccacagtacactgcaatatataatcaagtcttgtttctacagatttcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacacacaccacagtacactgcaatatataatcaagtcttgtttctacagatttcagc 380

                                                                       
Query: 181 caagatattcagtgcgtctcatatactgcattgtggcaggtttgtaatacagcacagcct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagatattgagtgcgtctcatatactgcattgtggcaggtttgtaatacagcacagcct 440

                                                                       
Query: 241 caattattatatattaaggaagaggaaactcctacaatgttagtggcctctaagtgaagt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattattaaatattaaggaagaggaaactcctacaatgttagtggcctctaagtgaagt 500

                                                                       
Query: 301 gggagttttacatacagaaaccaaacaagaagtaactgccgaggttgggggtccctattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagttttacatacagaaaccaaacaagaagtaactgccgaggttgggggtccctattt 560

                                                                       
Query: 361 actgctgttgggattggaaatcagtgtagctactgcagatgtgaatacagaggtgcttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgctgttgggattggaaatcagtgtagctactgcagatgtgaatacagaggtgcttaa 620

                                                                       
Query: 421 aaattaaaaatagaatttccctgtgcttcagacatctgacttctggatattcacctgana 480
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 621 aaattaaaaatagaatttccctgtgcttcagccatctgacttctggatattcacctgaaa 680

                                                       
Query: 481 gaatcagtcagcttattatagaggtatctggaagcccatgttca 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatcagtcagcttattatagaggtatctggaagcccatgttca 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)