BAC Information

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BAC

Clone NameMSMg01-391F21
Chromosome18 (Build37)
Map Location 75,922,982 - 75,923,319
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672
Downstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F21.T7 (MSMg01no391_f21.b1)MSMg01-391F21.TJ (MSMg01no391_f21.g1)
ACCAG493157AG493158
length774852
length of high quality
(start - end)
339 (67 - 405)146 (74 - 219)
definitionCHROMAT_FILE: MSMg01no391_f21.b1 PHD_FILE: MSMg01no391_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005CHROMAT_FILE: MSMg01no391_f21.g1 PHD_FILE: MSMg01no391_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCCTATAGGCCGAGGATCCGCGGAATTCCTGAAGC
TCTGCCAACCCACTCAAAGCAGCATTAGCTGTCTTCGGGGACTGGGAGTG
CATGTCAGGGCGATTACTTGCATTTTTGCTAATTTTGTTGGGTGCTTTAA
CCACTTGGGGAAACTGAGTCACAATAATAGCAAAGGTTTATTATTTTTAA
AAAAGATTTATTTATTTTATATATGTGAGTACATTTTTCTTTGTCTTCAG
ATACACTGAAAGAGGGCATCAGATCCCATTGCAGATGGTTGTGAGCCACC
ACGTGGTTGCTGGTATCTGAACTCAGGACCTCTGGAAGAACAATCAGTGT
TCTTAGCTGCTGAGCCATCTTCTCAGCCTAAATTAATCAATCAATCAATC
AATTACCTAATTAATTAATTTGTCTTGCTTGTTTTGTTTATGCTTTATCT
AAGTTATGGTTTTTCTGTTCAACACACAAGGCATGCGAGCCCTAGTCAGT
GCCGTCAGAGGGCTGAGAGCGGACCACCCTCCAGGAGAACCATGGGATTC
CTCTGATTAGTCCCTGACTTCTTGACCCCCAAACGTTGCCAACTCCTTCC
CACGCAACACTCCACCCGGTCTCCTCCCGCACCAACCGCTCCCCCCTCTG
GCACCCCTATTTTCTTTTCCTACTCCCCTGCTTTGTCTGGCCGCCCGCTC
TCTTTCTCTGTCCCCAACCCCCCCTTAACAACAAAACCCCGCACCCCCCC
CACCCTCTCTCTATAACCCCGCTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTATAAAATGACAGTTAAATCTGTGC
TAAGAAGACCAACGTCACAATCCTACTCACAGCCATTATTTAATTTTCTT
TTTAAAACTATGATTTATTAACACGTGCGTGTGTGTGTGTGTGTGTGTAT
GTGTGTATTTGTGGGTGTGCCCCTGCTTATCTTCTCAGCACCCGTATGTT
TTTCTCCTCTTCTCTACTGATGCTCCTGCTTCCTTTACTTTCTTGTACCC
TTTGTGACCCCCTATTTTTTTATTTTCGCACACCAGCCACACCTCGCGGA
AACCACCCTTTTTTTCCTTCTTCTCCCTGCCTCTTTCCCCTTCCTCCTTC
CCCCTTTCTTTCCCCCCTCCCCCCCCTTCCTTTTCTCCCCCTCCTTCTTT
TTTTCCCCCCCTTTTTCTCCCCCCTCTCTTATCTTCCTCTTCTCCCTCCC
TTCTCTTCCCTCTTCCCCTCTCCTTCCCTCCTTCTCCCTCTTCCCCCTCC
CTTTCCCCCCTTCTCCTCTCATCCATTTTCCCCCTTTCCTTCCTTCCCTC
CCTCTTTCTTCCGTACATTCTTTCTTCGCGTCCCTACCTTCTCCCCTTTC
TTCCTCCCCCCTTTTTTCCCCCCCCCCTACATCTTCTCCCCTTTCGTCCC
TTATTTTTTTTTTTTTCGCACCTCCCCCCCTTTCCTTTTTTTCTTTTTTT
TCCCCCTATCCCTTTTTTTTTCCCCTTTCCTCTTTCTTCCTTTCGTCCCC
CTCCTCTCTCTTCCGTTTCTTCTTCCCTCCCCCCCCCCCCCACCCTTTCC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f21.b1 MSMg01no391_f21.b1 CHROMAT_FILE:
MSMg01no391_f21.b1 PHD_FILE: MSMg01no391_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:33 2005
         (339 letters)



>mm_chr18_75922781_75923519
          Length = 739

 Score =  594 bits (307), Expect = e-174
 Identities = 331/339 (97%), Gaps = 2/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   agcagcattagctgtcttcggggactgggag-tgcatgtcagggcgattacttgcatttt 60
           |||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||
Sbjct: 202 agcagcattagctgtctttggggactgggagct-catgtcagggtgattacttgcatttt 260

                                                                       
Query: 61  tgctaattttgttgggtgctttaaccacttggggaaactgagtcacaataatagcaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctaattttgttgggtgctttaaccacttggggaaactgagtcacaataatagcaaagg 320

                                                                       
Query: 121 tttattatttttaaaaaagatttatttattttatatatgtgagtacatttttctttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattatttttaaaaaagatttatttattttatatatgtgagtacatttttctttgtct 380

                                                                       
Query: 181 tcagatacactgaaagagggcatcagatcccattgcagatggttgtgagccaccacgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatacactgaaagagggcatcagatcccattgcagatggttgtgagccaccacgtgg 440

                                                                       
Query: 241 ttgctggtatctgaactcaggacctctggaagaacaatcagtgttcttagctgctgagcc 300
           ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttgctgggaactgaactcaggacctctggaagagcaatcagtgttcttagctgctgagcc 500

                                                  
Query: 301 atcttctcagcctaaattaatcaatcaatcaatcaatta 339
           ||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 atcttctcagcctaaattaatcaatcaatcaattaatta 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)