BAC Information

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BAC

Clone NameMSMg01-391K08
Chromosome18 (Build37)
Map Location 52,960,170 - 52,960,414
singlet/doubletsinglet
Overlap geneSncaip
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391K08.T7 (MSMg01no391_k08.b1)MSMg01-391K08.TJ (MSMg01no391_k08.g1)
ACCAG493369AG493370
length787777
length of high quality
(start - end)
245 (61 - 305)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no391_k08.b1 PHD_FILE: MSMg01no391_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:56 2005CHROMAT_FILE: MSMg01no391_k08.g1 PHD_FILE: MSMg01no391_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATATTCACAACACCGCGGAATTCTGGCATAT
CTCATAACCATGTTGGTCTTCTTGTCGTATAAATAAATCCCAGTGGTGTT
CAGTACATAGGTTGAGAAGGCGTACATTCATTACCTTGTCAAGCCATATG
CCTGCAATTCCTCAGGACCTAATACATTTGATGGAATGCATATCTTCATT
ATTTACTAAGCCTAAATCATTTTCAGTCAAACATTTCCAGTTCTGACAAT
TAAGCCAAGGATTTCTGTTTCCACCTTAATGGTAAATGGCAGATTTTCTA
TGAAATATTTTTATTTCAATGAAGAGATTAAATAAGAAGGTACTTACACA
TATTTTCGAGCAATTTGGCGAGCTGAAGAACTATAAATATAAAACAATAC
ACCCCCACCTATCCAAAAAAACTCTTTAAGCTCTGAATGGATAAATTGCT
GCTTGCAATTGAAAACCCTCAATTGTTGGTTCTAATACTCAAAACAGCAC
TCAAAGGAATAGTGCACTTGACTGTCGATACCCGCATAAGCACCCAATGA
TCGCCCTTCTGTCCTTGATGACCCTGCCATGCCTGACTGTATAATAAACG
CCTGGCAATCCCCCTATGTCTTCCTCCCCGCACCCCACCATCTGAGTTTT
CCCCCCCCTTTTTAACAGTCTCCACGCCTCCCCGGCCCCCCCCCAGGCCA
TTGGAATACTTGACCCCCAACAAAAACCCCCCGCCCCGCAATAACTCATT
CCTCATCACATCCTGGGCACAACATCCCTCTCTCCCA
NCCCGATGATANTGGGAGGCCTGGCGGNCGCCTGGTTCACCACTTTAGGT
GAACTATAGAAGTTCAGCAAACATCTTTGTTTAGCTTTGTTCCCATTTTT
TAATAGGATTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTCTTTGCAAA
TATTGGATACTATCCCTCTATCAGATGTAGGGTTGGTAAAGATCTTTTCC
TAATCTGTTGTTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCAATTTT
ATTAGGTCCCATTTGTCAATTCTTGATCTTAGAGCATAAGTCATTGGTGT
TCTGTTCAGGAAATTTCCCTCNGTTCCATGTCTTTGGGGCTCTTCCCAAC
TTTCTCTTCTGTTACATTCAGTGTATCTGGTTTTATGTGGAGGTTCTTGA
TCTACTTATACTCCCCCCCCCTATTCGGATACCATATTGGCTCCCTTCCC
ATTCCTCCACACGATACCCACCACTTGAACCCCCCCCTCTTTGTTGACAT
ATGCCGTCCCTTTTTCTTTGCATGTCTCTCCGACCCCCTCCGTCTTCACC
CCTTGTTCCTCCTTTCCTGTGTTTTCCCTCTTCCCTTTTTCTCTTCCCCT
TCCCCTTCCCCCCCCCTCTTCTCCCTTCTTCGTTTCTAACCTATTATTCT
CTTCCCCCCCTTTTTTTTTTTTTTCTTTCCCCCCCCCCCTCCCTTTTTTT
CCCCCTCCCCCCTTTTCTCCCCCCCTTCTCCTCCTCCTCCCTTTTCTTCC
CTCCTCCTTTCCCCCCTTTTCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_k08.b1 MSMg01no391_k08.b1 CHROMAT_FILE:
MSMg01no391_k08.b1 PHD_FILE: MSMg01no391_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:56 2005
         (245 letters)



>mm_chr18_52959970_52960614
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttggtcttcttgtcgtataaataaatcccagtggtgttcagtacataggttgagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttggtcttcttgtcgtataaataaatcccagtggtgttcagtacataggttgagaagg 386

                                                                       
Query: 61  cgtacattcattaccttgtcaagccatatgcctgcaattcctcaggacctaatacatttg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 385 cgtacattcattaccttgtcaagccttatgcctgcaattcctcaggacccaatacatttg 326

                                                                       
Query: 121 atggaatgcatatcttcattatttactaagcctaaatcattttcagtcaaacatttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggaatgcatatcttcattatttactaagcctaaatcattttcagtcaaacatttccag 266

                                                                       
Query: 181 ttctgacaattaagccaaggatttctgtttccaccttaatggtaaatggcagattttcta 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctgacaattaagccaaggatttctgtttccaccttaatggtaaatggcagattttcta 206

                
Query: 241 tgaaa 245
           |||||
Sbjct: 205 tgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)