Query= MSMg01no391_n05.b1 MSMg01no391_n05.b1 CHROMAT_FILE:
MSMg01no391_n05.b1 PHD_FILE: MSMg01no391_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:10 2005
(396 letters)
>mm_chr18_17890176_17890972
Length = 797
Score = 723 bits (374), Expect = 0.0
Identities = 386/390 (98%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagcatttctgttcctaacagtgcagagctgaccttgcatttcgaggcacagg 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 594 gaattcagagcatttctgttcctaacagtgcagagctgaccttgcattttgaggcacagg 535
Query: 65 gtggaggtaaagctgtgtgagagtgtcagcagtatgagtaagcgctgttaataggaaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtggaggtaaagctgtgtgagagtgtcagcagtatgagtaagcgctgttaataggaaatg 475
Query: 125 gtttaatacccttgctgaagctgaacaatagttagcctgcaactgagagctgaggatgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtttaatacccttgctgaagctgaacaatagttagcctgcaactgagagctgaggatgca 415
Query: 185 ggccttatcctggattcatccttttatctttctattcccgcaagatgataaaaaccattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggccttatcctggattcatccttttatctttctattcccgcaagatgataaaaaccattt 355
Query: 245 gcttgacaaacaaggaccttgcctttattttcctctaatatggaaaattgttcttattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcttgacaaacaaggaccttgcctttattttcctctaatatggaaaattgttcttattta 295
Query: 305 gagttcttccattagccagaaagagctttcaccaattttttttt-attttatagtttaaa 363
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 294 gagttcttccattagccagaaagagctttcaccaattttttttttattttatagtttaaa 235
Query: 364 gtgtgtgagcgcgtgagtgtgtgtgtgtgt 393
||||||||| | ||||||||||||||||||
Sbjct: 234 gtgtgtgagtgtgtgagtgtgtgtgtgtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space: 304956
Effective search space used: 304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_n05.g1 MSMg01no391_n05.g1 CHROMAT_FILE:
MSMg01no391_n05.g1 PHD_FILE: MSMg01no391_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:10 2005
(216 letters)
>mm_chr18_17834387_17835003
Length = 617
Score = 319 bits (165), Expect = 7e-92
Identities = 181/187 (96%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 1 cagtaaccaacatgaaactggctcctaagctaggaaaagtgcctatttt-cttctgctat 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cagtaaccaacatgaaactggctcctaagctaggaaaagtgcctatttttcttctgctat 260
Query: 60 ttgcatggactaaaagtgtagttagggaatgagataagggttaagaccatgttaagacat 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcatggactaaaagtgtagtcagggaatgagataagggttaagaccatgttaagacat 320
Query: 120 attatatgcaatttagatacacagtgttcttatggtgtgtgtgtgtgtctgtgtgtgtgt 179
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 attatatgcaatttagatatacagtgttcttatggtgtgtgtgtgt--ctgtgtgtgtgt 378
Query: 180 gtttgtg 186
|| ||||
Sbjct: 379 gtgtgtg 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 617
Length adjustment: 9
Effective length of query: 207
Effective length of database: 608
Effective search space: 125856
Effective search space used: 125856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
