BAC Information

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BAC

Clone NameMSMg01-392D18
Chromosome18 (Build37)
Map Location 63,560,534 - 63,753,986
singlet/doubletdoublet
Overlap geneLOC627792
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Downstream geneTxnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D18.T7 (MSMg01no392_d18.b1)MSMg01-392D18.TJ (MSMg01no392_d18.g1)
ACCAG493816AG493817
length759756
length of high quality
(start - end)
483 (75 - 557)195 (131 - 325)
definitionCHROMAT_FILE: MSMg01no392_d18.b1 PHD_FILE: MSMg01no392_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:41 2005CHROMAT_FILE: MSMg01no392_d18.g1 PHD_FILE: MSMg01no392_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,560,534 - 63,561,016)(63,753,792 - 63,753,986)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTACAAAAAAATGAAACTGTTTGGGTGGTACAAAGGC
CATCGGGTCCTCTCGGAAGTGAGATGAGTCACCAGGGAAATTGGACCTAC
TCCTGGATTTAGTCTCCCACATGTGGCCATGATGGGATGTGACTGTGGTT
TTAGAACTACTGAAACTTCATGAGGATAAGGAGGTCAGACATACAAAACA
TTGTCTGACATAATTGAGCAAGACACATTGTCAATGTGGTCTGACTACCC
CAACTGAAGGCATGCTTATTTGAAGAATATGCCAGCTAAAACAAAGATAG
TGAAAGAATGAAGTAATGTCTGCCAAGGACCACACCCTGTGTGCCTGAAA
GGTGTATGAATCAGCACAATGACAACGTCTACTCTCATTAGCAGTGTGGT
TCCCTTGACCCCTATCTCCAAGCATAAGGTTGTGACATAGATTTCCCAGA
TAGTCGGAGAAATGTCACTGGGATGAGGGCCATCCAGGTAGAATGTGAAA
CATTCCACAACACTAATGAGGTTTGCCTTCTCAGATCAGTTGCCCTAGGG
GATGGTCCAAGGAGAATTTTGAACAAATGATGGAGACTCCTGGAGGAAGC
ACTGTAAGGGAGCGAAAGTATAGAACCCGTACTGGACAGCACGGCGCCGG
CCCTTTGGGCAATTGGTCCCCTGCCCCCAACTGTATATGAAGTGCCCCGC
GCTCTTGCG
TTCGATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCAGAAACTCCAGCAAAGAACTAGAGTTTGGAA
AGGAGCCAAGAAAGAAGAAAATGTATCGAACCTAATAGCAAATTAAAGAG
GGCAGAAGATAAAGTCATCTTGAAGAATAATCAACAGAAGTAATTTGGTT
TAAAAACCAAAAAATTTTGAGGACCTAAAGACCAAGGGAAAGTATTCAAA
TATCTTAACATAGGTGTAACTGAATTCCCAGGAAGTAAGGAGAGGAAGAA
TGAAGGAGAAAAGTTTGAGAAAATGTTATTATGCTTCCTCACATTTGGAT
TTCAAAGACCCATGTACTATTTTATGCGCCAAGCACAGAGAATTCCAAAC
TCCGTAAATGAAAGACAAACCAAGCGAGCAGACTAAATCTTCACATCTCT
AGACAGCACGACTAAGCAACATAAGTAAGGGGACACATCTTTGACCCGTC
CCATTATGAACATTGAACTACCGAGCTTCTTTGATAGGAAAAGGGCTAAC
CTATTTATCAGCTCCGAAATCTTCAGCTTCTTCCGAAGGTGAAAAATTTT
GGGGGGGTAAAGGGATTTGGAGGCCAAAACTGGGGAACTGAGTTTGATTG
GTTCGAACCCCTTTATTGTTATGAGGAGAAAAATTCCTGGGGGTGGGTCT
CCTGTCCCCCCCAATTGGTGGTCCTGGCCAAACATCTTCCTCTCCCTTCA
ACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d18.b1 MSMg01no392_d18.b1 CHROMAT_FILE:
MSMg01no392_d18.b1 PHD_FILE: MSMg01no392_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:41 2005
         (483 letters)



>mm_chr18_63560334_63561216
          Length = 883

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/483 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaactgtttgggtggtacaaaggccatcgggtcctctcggaagtgagatgagtcacca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tgaaactgtttgggtggtacaaaggccatcgggtcctctcagaagtgagatgagtcacca 260

                                                                       
Query: 61  gggaaattggacctactcctggatttagtctcccacatgtggccatgatgggatgtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaattggacctactcctggatttagtctcccacatgtggccatgatgggatgtgact 320

                                                                       
Query: 121 gtggttttagaactactgaaacttcatgaggataaggaggtcagacatacaaaacattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggttttagaactactgaaacttcatgaggataaggaggtcagacatacaaaacattgt 380

                                                                       
Query: 181 ctgacataattgagcaagacacattgtcaatgtggtctgactaccccaactgaaggcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacataattgagcaagacacattgtcaatgtggtctgactaccccaactgaaggcatg 440

                                                                       
Query: 241 cttatttgaagaatatgccagctaaaacaaagatagtgaaagaatgaagtaatgtctgcc 300
           ||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 cttaaaggaagaatatgccagctaaaacaaagttagtgaaagaatgaagtaatgtctgcc 500

                                                                       
Query: 301 aaggaccacaccctgtgtgcctgaaaggtgtatgaatcagcacaatgacaacgtctactc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aaggaccacaccctgtgtgcctgaaaggtgtatgaatcagtacaatgacaacgtctactc 560

                                                                       
Query: 361 tcattagcagtgtggttcccttgacccctatctccaagcataaggttgtgacatagattt 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tcattagcagtgtggttcccttgacccttatctccaagcataaggttgtgacatagattt 620

                                                                       
Query: 421 cccagatagtcggagaaatgtcactgggatgagggccatccaggtagaatgtgaaacatt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cccagatagtcggagaaatgtcactgggatgagggccatccaggtagaatgtgaaacact 680

              
Query: 481 cca 483
           |||
Sbjct: 681 cca 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_d18.g1 MSMg01no392_d18.g1 CHROMAT_FILE:
MSMg01no392_d18.g1 PHD_FILE: MSMg01no392_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:41 2005
         (195 letters)



>mm_chr18_63753592_63754186
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaatagcaaattaaagagggcagaagataaagtcatcttgaagaataatcaacagaag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cctaatggcaaattaaagagggcagaagataaagtcatcttgaagaataatcaacagaag 336

                                                                       
Query: 61  taatttggtttaaaaaccaaaaaattttgaggacctaaagaccaagggaaagtattcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taatttggtttaaaaaccaaaaaattttgaggacctaaagaccaagggaaagtattcaaa 276

                                                                       
Query: 121 tatcttaacataggtgtaactgaattcccaggaagtaaggagaggaagaatgaaggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatcttaacataggtgtaactgaattcccaggaagtaaggagaggaagaatgaaggagaa 216

                          
Query: 181 aagtttgagaaaatg 195
           |||||||||||||||
Sbjct: 215 aagtttgagaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)