BAC Information

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BAC

Clone NameMSMg01-392L01
Chromosome18 (Build37)
Map Location 55,791,088 - 55,791,475
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392L01.T7 (MSMg01no392_l01.b1)MSMg01-392L01.TJ (MSMg01no392_l01.g1)
ACCAG494166AG494167
length763772
length of high quality
(start - end)
305 (68 - 372)388 (71 - 458)
definitionCHROMAT_FILE: MSMg01no392_l01.b1 PHD_FILE: MSMg01no392_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:18 2005CHROMAT_FILE: MSMg01no392_l01.g1 PHD_FILE: MSMg01no392_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATTTGAGGAATACCGAATGGCAGACAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAACATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAACAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCACAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGCCACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCCTCCTGAGTGAGGTAACACCTTCCCAAA
GCACCTCACACCATATGTACTCCCCGATCAGTGCACATTAACCCCCACCC
TACGATACCCCACATATTATACCCCCTTCCCTAAACTACTGACCCTCCCC
ACAACCGACCACTCGCCGCGCCGACACCTTTGCCCCCCCCCACAACCGGC
CCCCCCCCCCCCG
TGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAATACTAAACGAAGACTGACAGGTTTTG
GTTAGTACCCTCTCCTGCCAGGAGATCTTCACTACAAGGACAGCCTGTGT
TGTTAGTTTTGCTCTAACTCAGGGCTGCCTGGTGTCTGTGATGAGAGCAT
ATTCAAAGTGTTCCACAGTGAGAGTGGCACTTGAAACTCTCTTCTATGAC
AAGTAGACTCTGACTTGTACACTCATCCCATCATGCCTTGCCCCCATACT
TGAATTTGATACAGGGACTCTAGTCTCCCAGGAAGATTCAAGAGTTTTGA
GACTTGTTATCTTTTACTCTTTGCCTTATTTCCCATTAAAATTGGTTTCG
ATGGAGAAAAATAAAAATGATAAGTCTATATCTTGTTAGTTCCCATATTT
TATGCACAGAGGAGCTGAAATACGTTTTCTGTATTTTCCTGGATACTATG
TAAGACCCCACACGTTTTCATTATTATGTCCCCTTCTTTTTCCCTCTCCC
TCCACTTCCTTTGTTCCTGGCCCGCTCTTCGATCTGCACCTCTTTGTTTT
ATTTCAGATATCTCCCGTCTGTCCCCCTTTTCTTTTTCCCTCCTCACCCT
TATTGTACTCATTCTTCATACCCTCTTTTTTCCCCTCGCCCCCCTAATTC
ACCTTTTCTTACCCTCCCTTGCATATCACCCCCTCCTTCCCCCGCTTCTT
CCTCACTTCTTTTTTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_l01.g1 MSMg01no392_l01.g1 CHROMAT_FILE:
MSMg01no392_l01.g1 PHD_FILE: MSMg01no392_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:18 2005
         (388 letters)



>mm_chr18_55790888_55791675
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatactaaacgaagactgacaggttttggttagtaccctctcctgccaggagatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatactaaacgaagactgacaggttttggttagtaccctctcctgccaggagatcttc 260

                                                                       
Query: 61  actacaaggacagcctgtgttgttagttttgctctaactcagggctgcctggtgtctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 actacaaggacagcctgtgttgttagttttgctctaactcagggctgcctgttgtctgtg 320

                                                                       
Query: 121 atgagagcatattcaaagtgttccacagtgagagtggcacttgaaactctcttctatgac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagagcatattcaaagcgttccacagtgagagtggcacttgaaactctcttctatgac 380

                                                                       
Query: 181 aagtagactctgacttgtacactcatcccatcatgccttgcccccatacttgaatttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aagtagactctgacttgtacactcatcccatcatgccttgcccccatacttgaatttgac 440

                                                                       
Query: 241 acagggactctagtctcccaggaagattcaagagttttgagacttgttatcttttactct 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 acagggactctagtctcccaggaagattcaagagttttgagtcttgttatcttttactct 500

                                                                       
Query: 301 ttgccttatttcccattaaaattggtttcgatggagaaaaataaaaatgataagtctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgccttatttcccattaaaattggtttcgatggagaaaaataaaaatgataagtctata 560

                                       
Query: 361 tcttgttagttcccatattttatgcaca 388
           ||||||||||||||||||||||||||||
Sbjct: 561 tcttgttagttcccatattttatgcaca 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)